RLG00000028537

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001849
Physical Location & Seq
Forward (+)
24020951 .. 24021380
430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028537

Sequence Viewer

Length: 333 bp
ATGCTCGCCGGCAGCGTGAGATCGACGCGCCTTAGCCTCTCAACACAGCCGTTTCTCAACACAGAGAAAGGGAAATCATACTTGTCACGCGGGGCTCGATCTTCCTCGCTCCAGAGAGGGTACTCTTTGTCGATGAAGAAATCGAGTTTTGATTGGAGAATTGGGGCGGAAAATGAGAGTGCGGTTGACGAACTTGGCGAAGCCGTGGCTAGTGATGGGGAGGGGTTCGGCGTCGTTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGCGACGGGACTAGAGGGATCGCCATTGACGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.55

Weight (kDa)

4.48

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 28, 90
AciI CCGC 3 cut(s) 90, 167, 182
AclWI GGATC 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 247, 302
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 1 cut(s) 298
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 209, 317
BceAI ACGGC 2 cut(s) 34, 188
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 210, 284
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 302
Bse118I RCCGGY 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 2 cut(s) 247, 302
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 28, 90
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 9, 241
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 247, 302
BsmAI GTCTC 1 cut(s) 300
BsmBI CGTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 3 cut(s) 20, 98, 290
BspACI CCGC 3 cut(s) 90, 167, 182
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 2 cut(s) 28, 90
BspPI GGATC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 20, 98, 290
BssNI GRCGYC 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 6, 10
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 28, 90
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 23, 101, 293
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 3 cut(s) 20, 98, 290
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 2 cut(s) 28, 90
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 6, 10
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 8
CseI GACGC 2 cut(s) 34, 220
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 6 cut(s) 36, 49, 95, 203, 209, 327
CviKI_1 RGCY 6 cut(s) 36, 49, 95, 203, 209, 327
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 22, 100, 292
DpnII GATC 3 cut(s) 20, 98, 290
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 300
FaiI YATR 1 cut(s) 79
FaqI GGGAC 1 cut(s) 294
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 210, 284
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 9, 241
HgaI GACGC 2 cut(s) 34, 220
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 2 cut(s) 187, 238
HindII GTYRAC 2 cut(s) 187, 238
HpaII CCGG 2 cut(s) 9, 241
Hpy166II GTNNAC 2 cut(s) 187, 238
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 187, 238
Hpy99I CGWCG 3 cut(s) 28, 236, 280
HpyAV CCTTC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 231
HspAI GCGC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 20, 98, 290
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 3 cut(s) 22, 125, 254
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 2 cut(s) 210, 284
MaeIII GTNAC 1 cut(s) 84
MalI GATC 3 cut(s) 22, 100, 292
MboI GATC 3 cut(s) 20, 98, 290
MboII GAAGA 3 cut(s) 93, 148, 257
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 1 cut(s) 159
MnlI CCTC 8 cut(s) 47, 110, 115, 214, 241, 259, 280, 304
MroNI GCCGGC 1 cut(s) 8
MspI CCGG 2 cut(s) 9, 241
MspR9I CCNGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 28, 90
NaeI GCCGGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 242
NdeII GATC 3 cut(s) 20, 98, 290
NgoMIV GCCGGC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 94, 195
PdiI GCCGGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 14
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 3 cut(s) 20, 98, 290
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 97
SetI ASST 1 cut(s) 252
Sse9I AATT 1 cut(s) 159
SsiI CCGC 3 cut(s) 90, 167, 182
SspMI CTAG 2 cut(s) 210, 284
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 5 cut(s) 23, 97, 131, 143, 264
TasI AATT 1 cut(s) 159
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 149
XspI CTAG 2 cut(s) 210, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.