Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Reverse (-)

56899664 .. 56900300

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGCGATAGATCGGCCAAGCCCCCAAAATCAAACGCTCCCACATCTGGTCCATCAAATCCACATCCTCAAGAAACATGGACCTCACCGAGCTCACACCCACCGTGGCCATGCTCGCCGGCAACGTGAGATCGACGCTCATGAGCCTCTCAACACAGCCGTTTCTCAGCACAGAGAAAGGGAAATCATACTTGTCACGCGGGGCTCGATCTTCCTCTCTCTAGAGATGGTACTCTTTGTCGATGAAGAAATCGAGGTCAGACTCACGCACTTGGAAGCGCGTGACGGCAGAGCGCACCCAAGAGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATTGGAGAATTGGGGAGGAGAATGAGAGCGCGGTTAACGAACTCGGCGAAGCCGTGGCTCGTGATGGGGAAGGGTTCGGCGTCGTTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACCGGACTAAAGGGATCGCCATTGGCTGGAGACGAGGGAGTTATGGATGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

5.0

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	3 cut(s)	202, 283, 392
AciI	CCGC	3 cut(s)	202, 350, 392
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	2 cut(s)	17, 109
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	234, 327
AfiI	CCNNNNNNNGG	3 cut(s)	49, 457, 512
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	479, 510
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	3 cut(s)	17, 109, 535
AspLEI	GCGC	3 cut(s)	283, 298, 392
AspS9I	GGNCC	2 cut(s)	52, 83
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	52, 83
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	97, 209
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	4 cut(s)	63, 223, 419, 527
BceAI	ACGGC	3 cut(s)	146, 304, 398
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	479, 510
BfaI	CTAG	1 cut(s)	224
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	52, 83
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	52, 83
BmrFI	CCNGG	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	106, 414
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 457, 512
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	106, 414
BseGI	GGATG	2 cut(s)	66, 538
BseLI	CCNNNNNNNGG	3 cut(s)	49, 457, 512
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	392
Bsh1236I	CGCG	3 cut(s)	202, 283, 392
BshFI	GGCC	3 cut(s)	19, 111, 537
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	121, 451, 489
BslI	CCNNNNNNNGG	3 cut(s)	49, 457, 512
BsmAI	GTCTC	2 cut(s)	479, 510
BsmBI	CGTCTC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	19, 111, 537
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	97, 209
Bsp143I	GATC	4 cut(s)	13, 132, 210, 500
BspACI	CCGC	3 cut(s)	202, 350, 392
BspANI	GGCC	3 cut(s)	19, 111, 537
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	202, 283, 392
BspHI	TCATGA	1 cut(s)	142
BspPI	GGATC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	106, 414
BssMI	GATC	4 cut(s)	13, 132, 210, 500
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	118, 122
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	2 cut(s)	106, 414
BstF5I	GGATG	2 cut(s)	66, 538
BstFNI	CGCG	3 cut(s)	202, 283, 392
BstHHI	GCGC	3 cut(s)	283, 298, 392
BstKTI	GATC	4 cut(s)	16, 135, 213, 503
BstMAI	GTCTC	2 cut(s)	479, 510
BstMBI	GATC	4 cut(s)	13, 132, 210, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	450
BstUI	CGCG	3 cut(s)	202, 283, 392
BsuRI	GGCC	3 cut(s)	19, 111, 537
BtgI	CCRYGG	2 cut(s)	106, 414
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	66, 538
Cac8I	GCNNGC	2 cut(s)	118, 122
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	3 cut(s)	283, 298, 392
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	52, 83
CseI	GACGC	2 cut(s)	146, 430
Csp6I	GTAC	2 cut(s)	233, 326
CviAII	CATG	3 cut(s)	80, 113, 143
CviQI	GTAC	2 cut(s)	233, 326
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	15, 134, 212, 502
DpnII	GATC	4 cut(s)	13, 132, 210, 500
EaeI	YGGCCR	2 cut(s)	17, 109
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	97, 209
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	52, 83
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoT38I	GRGCYC	2 cut(s)	97, 209
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	3 cut(s)	83, 116, 146
FaiI	YATR	5 cut(s)	81, 114, 144, 191, 530
FatI	CATG	3 cut(s)	79, 112, 142
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	97, 209
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	3 cut(s)	282, 297, 391
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	19, 111, 537
HapII	CCGG	3 cut(s)	121, 451, 489
HgaI	GACGC	2 cut(s)	146, 430
HhaI	GCGC	3 cut(s)	283, 298, 392
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	83, 116, 146
Hin6I	GCGC	3 cut(s)	281, 296, 390
HinP1I	GCGC	3 cut(s)	281, 296, 390
HincII	GTYRAC	3 cut(s)	310, 397, 448
HindII	GTYRAC	3 cut(s)	310, 397, 448
HinfI	GANTC	2 cut(s)	264, 306
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	3 cut(s)	121, 451, 489
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	310, 397, 448
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	4 cut(s)	73, 143, 224, 422
Hpy8I	GTNNAC	3 cut(s)	310, 397, 448
Hpy99I	CGWCG	3 cut(s)	140, 314, 446
HpyAV	CCTTC	3 cut(s)	347, 425, 473
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	127, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	127, 312
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	83, 116, 146
HspAI	GCGC	3 cut(s)	281, 296, 390
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	13, 132, 210, 500
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	35, 134, 314, 464, 498, 502
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	127, 312
MaeIII	GTNAC	2 cut(s)	196, 284
MalI	GATC	4 cut(s)	15, 134, 212, 502
MboI	GATC	4 cut(s)	13, 132, 210, 500
MboII	GAAGA	4 cut(s)	205, 260, 347, 467
MhlI	GDGCHC	2 cut(s)	97, 209
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	258, 315
Mox20I	TGGCCA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	3 cut(s)	121, 451, 489
MspR9I	CCNGG	1 cut(s)	452
MvnI	CGCG	3 cut(s)	202, 283, 392
MwoI	GCNNNNNNNGC	1 cut(s)	117
NaeI	GCCGGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	13, 132, 210, 500
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	83, 116, 146
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	196, 284
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	4 cut(s)	124, 206, 405, 411
PdiI	GCCGGC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	512
PleI	GAGTC	2 cut(s)	258, 314
PpsI	GAGTC	2 cut(s)	258, 314
Psp124BI	GAGCTC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	52, 83
RsaI	GTAC	2 cut(s)	234, 327
RsaNI	GTAC	2 cut(s)	233, 326
SacI	GAGCTC	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	13, 132, 210, 500
Sau96I	GGNCC	2 cut(s)	52, 83
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	2 cut(s)	258, 315
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	2 cut(s)	97, 209
SetI	ASST	8 cut(s)	88, 97, 130, 261, 315, 322, 358, 462
SinI	GGWCC	2 cut(s)	52, 83
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	3 cut(s)	202, 350, 392
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	2 cut(s)	130, 315
TaqI	TCGA	6 cut(s)	135, 209, 243, 255, 309, 474
TasI	AATT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	196, 284
Tsp45I	GTSAC	2 cut(s)	196, 284
TspDTI	ATGAA	2 cut(s)	261, 354
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	52, 83
XbaI	TCTAGA	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.