Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Reverse (-)

8821867 .. 8822391

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCGTCGGGTTCGAGTGCTATGTGTTGCTCCGGACACAAGGTGGAGTGCTGGGCTCTGTGTTGCTTCGTTGAGCTCTGTCTTCCAAGGTCACCACGAACGATACCACCACCACCAACCCTGCAGCTGTACCGCCACTGTCGCCACTGCACCGAGTTCACGGTCACAGCGCGGCCGCAATGGGAGTTCGTGGGTCGAATCCAAGCTGGGTACTGCTGATGGGTTATCCTCGTGGTCCGATTTGGAAGAAAGCGCGATCGATGAAGTCAGTGAAGAATTCAGCATGGGCCTATGTTGGGTTAAGATCGGATTTGGGGGCCGGAGGGAAGAGGTGGTAGGAGAAGTTCAAGGAGGGAACGAGGGACCAGAGGGGTCGCTATTTGCCGGAGATGAGAGAGGTGTTGATGGCCTCAGGGGTGGGGAGGAAGGAGAGGATAGGGAGGAGGATATCTTCTGGGAGGTTGTTGAGGCTCTGGTTAGGGTTGCAGAAGAGTCGATCTCGTTGGATTTCGATTTTTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.04

Weight (kDa)

4.61

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	171, 254
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	3 cut(s)	132, 171, 175
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	130, 211
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	347
AluBI	AGCT	3 cut(s)	75, 126, 205
AluI	AGCT	3 cut(s)	75, 126, 205
Alw21I	GWGCWC	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	4 cut(s)	172, 286, 316, 406
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	171, 254
AspS9I	GGNCC	4 cut(s)	234, 286, 316, 362
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	234, 362
AxyI	CCTNAGG	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	57, 77
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	212, 398
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	3 cut(s)	124, 172, 175
BlsI	GCNGC	3 cut(s)	125, 173, 176
Bme18I	GGWCC	2 cut(s)	234, 362
BmgT120I	GGNCC	4 cut(s)	234, 286, 316, 362
BmiI	GGNNCC	2 cut(s)	317, 363
BpiI	GAAGAC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	2 cut(s)	50, 205
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	171, 254
Bsh1285I	CGRYCG	2 cut(s)	175, 258
BshFI	GGCC	4 cut(s)	174, 288, 318, 408
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	2 cut(s)	175, 258
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	32, 319, 384
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	174, 288, 318, 408
Bsp1286I	GDGCHC	2 cut(s)	57, 77
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	255, 303, 495
BspACI	CCGC	3 cut(s)	132, 171, 175
BspANI	GGCC	4 cut(s)	174, 288, 318, 408
BspCNI	CTCAG	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	171, 254
BspLI	GGNNCC	2 cut(s)	317, 363
BspMAI	CTGCAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	255, 303, 495
BssSI	CACGAG	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	139, 162
Bst6I	CTCTTC	2 cut(s)	321, 483
BstDEI	CTNAG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	171, 254
BstHHI	GCGC	2 cut(s)	171, 254
BstKTI	GATC	3 cut(s)	258, 306, 498
BstMBI	GATC	3 cut(s)	255, 303, 495
BstMCI	CGRYCG	2 cut(s)	175, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	2 cut(s)	171, 254
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	174, 288, 318, 408
BsuTUI	ATCGAT	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	3 cut(s)	135, 144, 274
CciNI	GCGGCCGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	171, 254
Cfr13I	GGNCC	4 cut(s)	234, 286, 316, 362
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	129, 210
CviAII	CATG	1 cut(s)	283
CviQI	GTAC	2 cut(s)	129, 210
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	257, 305, 497
DpnII	GATC	3 cut(s)	255, 303, 495
DraIII	CACNNNGTG	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	172
EagI	CGGCCG	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	321, 483
EarI	CTCTTC	2 cut(s)	321, 483
Ecl136II	GAGCTC	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	57, 77
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	234, 362
Eco52I	CGGCCG	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	57, 77
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	22, 284, 292
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	124, 172, 175
FriOI	GRGCYC	2 cut(s)	57, 77
Fsp4HI	GCNGC	3 cut(s)	124, 172, 175
GlaI	GCGC	2 cut(s)	170, 253
GluI	GCNGC	3 cut(s)	124, 172, 175
GsaI	CCCAGC	2 cut(s)	54, 209
HaeIII	GGCC	4 cut(s)	174, 288, 318, 408
HapII	CCGG	3 cut(s)	32, 319, 384
HhaI	GCGC	2 cut(s)	171, 254
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	169, 252
HinP1I	GCGC	2 cut(s)	169, 252
HinfI	GANTC	2 cut(s)	197, 491
HpaII	CCGG	3 cut(s)	32, 319, 384
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	238, 308
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	139, 162
HpyCH4V	TGCA	3 cut(s)	123, 149, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	169, 252
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	255, 303, 495
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	89, 162
MalI	GATC	3 cut(s)	257, 305, 497
MboI	GATC	3 cut(s)	255, 303, 495
MboII	GAAGA	6 cut(s)	73, 257, 284, 338, 442, 500
MhlI	GDGCHC	2 cut(s)	57, 77
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	32, 319, 384
MvnI	CGCG	2 cut(s)	171, 254
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	255, 303, 495
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	317, 363
NmuCI	GTSAC	2 cut(s)	89, 162
NotI	GCGGCCGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	125, 173, 176
Ple19I	CGATCG	1 cut(s)	258
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	77
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	50, 205
PspN4I	GGNNCC	2 cut(s)	317, 363
PspPI	GGNCC	4 cut(s)	234, 286, 316, 362
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	125
PvuI	CGATCG	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	130, 211
RsaNI	GTAC	2 cut(s)	129, 210
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	124, 172, 175
Sau3AI	GATC	3 cut(s)	255, 303, 495
Sau96I	GGNCC	4 cut(s)	234, 286, 316, 362
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	57, 77
SetI	ASST	8 cut(s)	44, 77, 91, 128, 207, 333, 400, 462
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	234, 362
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	3 cut(s)	132, 171, 175
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	139, 162
TaqI	TCGA	5 cut(s)	13, 195, 258, 494, 510
TasI	AATT	1 cut(s)	275
TauI	GCSGC	2 cut(s)	174, 177
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	142, 151, 274
TseFI	GTSAC	2 cut(s)	89, 162
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	89, 162
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	3 cut(s)	142, 151, 274
VpaK11BI	GGWCC	2 cut(s)	234, 362
XapI	RAATTY	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.