Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Reverse (-)

52377927 .. 52378238

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG447900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTACTCTGTGTCGATGAAGAAGTCGAGGTCGAGCTTATGCGCCCGGAAGCGCATGACGGCGGAGCGCACCCAGGAGTCGACGTGGGAGGTGTAGTAGTGGTAGAAGATGAAGGAGAGGCAGAAGGTTTTGATCAGAGAATTGGGGTGGAGGATGATAGCGCGGTCGACGAACTCGGCGAAGCAGTGGCTTGTGAAGGGAAGAGGTTCGGATTCGTTGACCAGGAAAAGGTGGTAGGAAAGGTCGAGGAGGGGGAGACGGGACCAGAGAGATCGTCATTGGCGGGACACGAGATTGTGGATGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

10.85

Weight (kDa)

4.05

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	81, 168
AccII	CGCG	1 cut(s)	164
AciI	CCGC	3 cut(s)	63, 164, 284
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	73, 222
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	304
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	45, 55, 70, 164
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	290
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	75, 224
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	251
Bme1390I	CCNGG	3 cut(s)	47, 75, 224
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	3 cut(s)	47, 75, 224
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 81, 99, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	75, 224
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	160, 307
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	276, 300
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	276, 300
BsnI	GGCC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	133, 272
BspACI	CCGC	3 cut(s)	63, 164, 284
BspANI	GGCC	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	133, 272
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	75, 224
Bst6I	CTCTTC	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	160, 307
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	4 cut(s)	45, 55, 70, 164
BstKTI	GATC	2 cut(s)	136, 275
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	133, 272
BstMCI	CGRYCG	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	75, 224
BstSCI	CCNGG	3 cut(s)	45, 73, 222
BstUI	CGCG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	160, 307
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	4 cut(s)	45, 55, 70, 164
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	3 cut(s)	37, 191, 306
CviKI_1	RGCY	3 cut(s)	37, 191, 306
CviQI	GTAC	1 cut(s)	5
DpnI	GATC	2 cut(s)	135, 274
DpnII	GATC	2 cut(s)	133, 272
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	73, 222
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	59
FaiI	YATR	2 cut(s)	41, 57
FaqI	GGGAC	2 cut(s)	276, 300
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	2 cut(s)	81, 168
FokI	GGATG	1 cut(s)	167
GlaI	GCGC	4 cut(s)	44, 54, 69, 163
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	4 cut(s)	45, 55, 70, 164
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	4 cut(s)	43, 53, 68, 162
HinP1I	GCGC	4 cut(s)	43, 53, 68, 162
HincII	GTYRAC	3 cut(s)	82, 169, 220
HindII	GTYRAC	3 cut(s)	82, 169, 220
HinfI	GANTC	2 cut(s)	78, 213
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	82, 169, 220
Hpy188I	TCNGA	2 cut(s)	138, 212
Hpy8I	GTNNAC	3 cut(s)	82, 169, 220
Hpy99I	CGWCG	2 cut(s)	86, 173
HpyAV	CCTTC	3 cut(s)	107, 119, 191
HpyCH4IV	ACGT	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	4 cut(s)	43, 53, 68, 162
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 272
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	60, 60, 87, 209, 236, 279
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	135, 274
MboI	GATC	2 cut(s)	133, 272
MboII	GAAGA	3 cut(s)	32, 119, 214
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	22, 83, 112, 145, 198, 241, 244
MroXI	GAANNNNTTC	1 cut(s)	206
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	47, 75, 224
MvaI	CCWGG	2 cut(s)	75, 224
MvnI	CGCG	1 cut(s)	164
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	133, 272
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	73, 222
PspGI	CCWGG	2 cut(s)	73, 222
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SalI	GTCGAC	2 cut(s)	80, 167
Sau3AI	GATC	2 cut(s)	133, 272
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	47, 75, 224
SetI	ASST	8 cut(s)	33, 39, 87, 94, 130, 209, 234, 246
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	3 cut(s)	63, 164, 284
StyD4I	CCNGG	3 cut(s)	45, 73, 222
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	6 cut(s)	15, 27, 33, 81, 168, 246
TasI	AATT	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	33, 126
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	81, 168
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.