Rroxscaffold_7G00215600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001849
Physical Location & Seq
Forward (+)
66209891 .. 66210247
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215600.1

Sequence Viewer

Length: 357 bp
ATGATACTTGTCACGCGGGGCTCGATCTTCCTCGCTCCAGAGATGGTACTCTTTGTCGATGAAGAAGTTGAGGTCAAGCTCAAGCGCCCGGAAGCGCGTGACGGTGGAGCACACCAAAGAGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGGAAGAGAGGCGGAAGGTTTTGATCGGAGAATTAGGGCGGAGAATGAGAGCGCGGTTGATGAACTCGGCAAAGTGGTGGCTCGTCATAGGGAGGGGTTCGGCGTCGTTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGCTGGAGACAAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.72

Weight (kDa)

4.52

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 16, 97, 206
AciI CCGC 4 cut(s) 16, 164, 191, 206
AclWI GGATC 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 48, 141
AfiI CCNNNNNNNGG 2 cut(s) 271, 326
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 293, 324
AlwI GGATC 1 cut(s) 322
AoxI GGCC 1 cut(s) 349
AspLEI GCGC 3 cut(s) 87, 97, 206
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 2 cut(s) 89, 266
AvaII GGWCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 3 cut(s) 37, 146, 341
BcnI CCSGG 2 cut(s) 89, 266
BcoDI GTCTC 2 cut(s) 293, 324
BfoI RGCGCY 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 2 cut(s) 89, 266
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 89, 266
BpmI CTGGAG 2 cut(s) 21, 348
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 89, 266
BsaHI GRCGYC 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 326
Bse1I ACTGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 271, 326
BseNI ACTGG 1 cut(s) 147
Bsh1236I CGCG 3 cut(s) 16, 97, 206
BshFI GGCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 2 cut(s) 89, 265
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 271, 326
BsmAI GTCTC 2 cut(s) 293, 324
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 23, 112
Bsp143I GATC 3 cut(s) 24, 175, 314
BspACI CCGC 4 cut(s) 16, 164, 191, 206
BspANI GGCC 1 cut(s) 351
BspFNI CGCG 3 cut(s) 16, 97, 206
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 147
BssMI GATC 3 cut(s) 24, 175, 314
BssNI GRCGYC 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 151, 264
BstACI GRCGYC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 3 cut(s) 16, 97, 206
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 97, 206
BstKTI GATC 3 cut(s) 27, 178, 317
BstMAI GTCTC 2 cut(s) 293, 324
BstMBI GATC 3 cut(s) 24, 175, 314
BstSCI CCNGG 2 cut(s) 87, 264
BstUI CGCG 3 cut(s) 16, 97, 206
BsuRI GGCC 1 cut(s) 351
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 352
CfoI GCGC 3 cut(s) 87, 97, 206
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 47, 140
CviJI RGCY 5 cut(s) 21, 79, 233, 326, 351
CviKI_1 RGCY 5 cut(s) 21, 79, 233, 326, 351
CviQI GTAC 2 cut(s) 47, 140
DpnI GATC 3 cut(s) 26, 177, 316
DpnII GATC 3 cut(s) 24, 175, 314
Eam1104I CTCTTC 2 cut(s) 151, 264
EarI CTCTTC 2 cut(s) 151, 264
EciI GGCGGA 2 cut(s) 179, 206
Eco24I GRGCYC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 293
FaiI YATR 1 cut(s) 240
FaqI GGGAC 1 cut(s) 318
FauI CCCGC 1 cut(s) 9
FblI GTMKAC 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 23
GlaI GCGC 3 cut(s) 86, 96, 205
GsuI CTGGAG 2 cut(s) 21, 348
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 89, 265
HgaI GACGC 1 cut(s) 244
HhaI GCGC 3 cut(s) 87, 97, 206
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 3 cut(s) 85, 95, 204
HinP1I GCGC 3 cut(s) 85, 95, 204
HincII GTYRAC 2 cut(s) 124, 262
HindII GTYRAC 2 cut(s) 124, 262
HinfI GANTC 1 cut(s) 120
HpaII CCGG 2 cut(s) 89, 265
Hpy166II GTNNAC 2 cut(s) 124, 262
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 124, 262
Hpy99I CGWCG 2 cut(s) 128, 260
HpyAV CCTTC 2 cut(s) 161, 287
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 3 cut(s) 85, 95, 204
Kzo9I GATC 3 cut(s) 24, 175, 314
LmnI GCTCC 2 cut(s) 40, 107
LpnPI CCDG 6 cut(s) 51, 102, 128, 278, 312, 321
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 10, 98
MalI GATC 3 cut(s) 26, 177, 316
MboI GATC 3 cut(s) 24, 175, 314
MboII GAAGA 5 cut(s) 19, 74, 161, 168, 281
MhlI GDGCHC 2 cut(s) 23, 112
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 8 cut(s) 41, 64, 125, 154, 238, 265, 283, 304
MspI CCGG 2 cut(s) 89, 265
MspR9I CCNGG 2 cut(s) 89, 266
MvnI CGCG 3 cut(s) 16, 97, 206
NciI CCSGG 2 cut(s) 89, 266
NdeII GATC 3 cut(s) 24, 175, 314
NlaIV GGNNCC 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 10, 98
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 326
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 2 cut(s) 48, 141
RsaNI GTAC 2 cut(s) 47, 140
SalI GTCGAC 1 cut(s) 122
Sau3AI GATC 3 cut(s) 24, 175, 314
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 89, 266
SduI GDGCHC 2 cut(s) 23, 112
SetI ASST 6 cut(s) 75, 81, 129, 136, 172, 276
SinI GGWCC 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 183
SsiI CCGC 4 cut(s) 16, 164, 191, 206
StyD4I CCNGG 2 cut(s) 87, 264
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 23, 57, 123, 288
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 139
TseFI GTSAC 2 cut(s) 10, 98
Tsp45I GTSAC 2 cut(s) 10, 98
TspDTI ATGAA 2 cut(s) 75, 228
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.