Rw7G029830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001849
Physical Location & Seq
Forward (+)
41668242 .. 41670370
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029830.1

Sequence Viewer

Length: 315 bp
ATGCTTTCGATGTCAGGATGCTGGTTTTGTACCAAATGGAATTGGGAGCAAAGGAATCAGCCTATTTTGGACATTCCTCCACCGCCAAGCTTCGTGGCTATCACAGTTGTTGGTGTCGAACCCAGAACCGGTACCATATCTTTTGAAGAAAACATGACCACCCCAATATTTCGGTGCTTGTTGACTCTCAAGGAAATATCCGAGCTTCATTCTGGTCCATCACGTGGCTTTCAGGCGGTCTTAGGATTGATTGTACAAGTTCAATCCTCGATACATACTGGGGAAGCCTCCAAGAAGTTTTGTGATCGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

7.7

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 224
AciI CCGC 2 cut(s) 83, 236
AcvI CACGTG 1 cut(s) 224
AfaI GTAC 3 cut(s) 31, 133, 255
AfiI CCNNNNNNNGG 2 cut(s) 128, 224
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 146, 263
AluBI AGCT 2 cut(s) 90, 205
AluI AGCT 2 cut(s) 90, 205
AsiGI ACCGGT 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 224
BccI CCATC 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 224
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 128, 224
BseNI ACTGG 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 131
BshTI ACCGGT 1 cut(s) 128
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 128, 224
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 2 cut(s) 83, 236
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 30, 132, 254
CspAI ACCGGT 1 cut(s) 128
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 61, 90, 98, 205, 228, 287
CviKI_1 RGCY 6 cut(s) 61, 90, 98, 205, 228, 287
CviQI GTAC 3 cut(s) 30, 132, 254
DdeI CTNAG 1 cut(s) 241
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 215
Eco72I CACGTG 1 cut(s) 224
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 137, 155, 276
FatI CATG 1 cut(s) 153
FokI GGATG 1 cut(s) 30
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 55, 184
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 157
KpnI GGTACC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 7, 136, 142, 198, 218, 264, 295
LweI GCATC 1 cut(s) 8
MaeII ACGT 1 cut(s) 223
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 158
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 3 cut(s) 87, 277, 298
MspI CCGG 1 cut(s) 129
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 128
PleI GAGTC 1 cut(s) 178
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 3 cut(s) 31, 133, 255
RsaNI GTAC 3 cut(s) 30, 132, 254
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 178
SetI ASST 4 cut(s) 92, 207, 226, 314
SfaNI GCATC 1 cut(s) 8
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 40
SsiI CCGC 2 cut(s) 83, 236
SspI AATATT 1 cut(s) 168
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 8, 117, 269
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.