Rh2AG582800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001849
Physical Location & Seq
Reverse (-)
81552064 .. 81552378
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG582800.1

Sequence Viewer

Length: 315 bp
ATGGTACTCTTTGTCGATGAAGAAGTCGAGGTCAGGCTCACGCACCCGAAAACGCGTGACGGCAGAGCGCACCCAAGAGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATCGGAGAATTGGGGCGGAGAATGAGAGAGCGATTGACGAACTCGGCGAAGCCATGGCTCGTGACGGGGAGGAGTTCGGCGTCGTTGACTGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGCGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.32

Weight (kDa)

4.13

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 122, 149, 284
AclWI GGATC 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 6, 99
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 53
AjiI CACGTC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 251, 282
AlwI GGATC 1 cut(s) 280
AoxI GGCC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 263
AvaII GGWCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 192
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 251, 282
BmcAI AGTACT 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 105, 227
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 105, 227
BseRI GAGGAG 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 251, 282
BsmBI CGTCTC 2 cut(s) 251, 282
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 133, 272
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 122, 149, 284
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 105, 227
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 133, 272
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 2 cut(s) 136, 275
BstMAI GTCTC 2 cut(s) 251, 282
BstMBI GATC 2 cut(s) 133, 272
BstUI CGCG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 5, 98
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 37, 185, 191, 309
CviKI_1 RGCY 4 cut(s) 37, 185, 191, 309
CviQI GTAC 2 cut(s) 5, 98
DpnI GATC 2 cut(s) 135, 274
DpnII GATC 2 cut(s) 133, 272
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 2 cut(s) 137, 164
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 2 cut(s) 251, 282
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 277
FblI GTMKAC 1 cut(s) 81
GlaI GCGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 309
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 2 cut(s) 82, 220
HindII GTYRAC 2 cut(s) 82, 220
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 82, 220
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 82, 220
Hpy99I CGWCG 2 cut(s) 86, 218
HpyAV CCTTC 2 cut(s) 119, 245
HpyCH4IV ACGT 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 133, 272
LpnPI CCDG 4 cut(s) 19, 86, 208, 279
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 56, 194
MalI GATC 2 cut(s) 135, 274
MboI GATC 2 cut(s) 133, 272
MboII GAAGA 3 cut(s) 32, 119, 239
MluCI AATT 1 cut(s) 141
MluI ACGCGT 1 cut(s) 53
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 8 cut(s) 22, 83, 112, 196, 223, 241, 262, 286
MvnI CGCG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 186
NdeII GATC 2 cut(s) 133, 272
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 56, 194
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 6, 99
RsaNI GTAC 2 cut(s) 5, 98
SalI GTCGAC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 133, 272
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 87
SetI ASST 5 cut(s) 33, 87, 94, 130, 234
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 141
SsiI CCGC 3 cut(s) 122, 149, 284
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 15, 27, 81, 246
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 97
TseFI GTSAC 2 cut(s) 56, 194
Tsp45I GTSAC 2 cut(s) 56, 194
TspDTI ATGAA 2 cut(s) 33, 126
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.