Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

22419279 .. 22423491

Gene Structure 4213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCTGGGAGAAGGTTCTGGAGAGGGACTTGGTGTTATTTAAAGGCACCAAGGCGAAACAGACTGAGGATGTTGCTTATAGGATGCATGAATGGGATTTTCCAAATTTTCGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTCGCACTATAGCAATGGTGGCCTGGAAAGAGAGTCCAACAATCCCTACCATTGGCAAGCAGTAACTGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAAGAATTTCTTACACATTGAATCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

107

Amino Acids

12.58

Weight (kDa)

10.69

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	3 cut(s)	105, 172, 298
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	286, 314
AhdI	GACNNNNNGTC	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	166, 195
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	105, 172, 298
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	168, 197
BfmI	CTRYAG	2 cut(s)	181, 255
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	168, 197
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	168, 197
BmsI	GCATC	2 cut(s)	74, 238
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	2 cut(s)	40, 150
BsaJI	CCNNGG	2 cut(s)	50, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	168, 197
BseDI	CCNNGG	2 cut(s)	50, 167
BseGI	GGATG	3 cut(s)	75, 89, 253
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	112, 262
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	50, 167
BssMI	GATC	2 cut(s)	112, 262
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	168, 197
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	75, 89, 253
BstKTI	GATC	2 cut(s)	115, 265
BstMBI	GATC	2 cut(s)	112, 262
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 257
BstNI	CCWGG	2 cut(s)	168, 197
BstSCI	CCNGG	2 cut(s)	166, 195
BstSFI	CTRYAG	2 cut(s)	181, 255
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	75, 89, 253
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	147, 160, 195, 260
CviKI_1	RGCY	4 cut(s)	147, 160, 195, 260
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	114, 264
DpnII	GATC	2 cut(s)	112, 262
DraI	TTTAAA	1 cut(s)	42
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	166, 195
EcoT14I	CCWWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	80, 89, 183
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	82, 96, 260
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	40, 150
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	2 cut(s)	206, 314
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	87, 251, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 257
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	112, 262
LpnPI	CCDG	8 cut(s)	4, 117, 153, 180, 182, 209, 260, 303
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	74, 238
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	114, 264
MboI	GATC	2 cut(s)	112, 262
MluCI	AATT	4 cut(s)	105, 172, 269, 298
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	6 cut(s)	17, 60, 132, 137, 150, 174
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	168, 197
MvaI	CCWGG	2 cut(s)	168, 197
MwoI	GCNNNNNNNGC	2 cut(s)	192, 257
NdeII	GATC	2 cut(s)	112, 262
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	259
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	166, 195
PspGI	CCWGG	2 cut(s)	166, 195
PspN4I	GGNNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	239
PvuI	CGATCG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	112, 262
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	168, 197
SetI	ASST	2 cut(s)	17, 262
SfaNI	GCATC	2 cut(s)	74, 238
SfcI	CTRYAG	2 cut(s)	181, 255
Sse9I	AATT	4 cut(s)	105, 172, 269, 298
StyD4I	CCNGG	2 cut(s)	166, 195
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	111, 115
TasI	AATT	4 cut(s)	105, 172, 269, 298
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	3 cut(s)	105, 172, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.