Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

78461336 .. 78463551

Gene Structure 2216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACTTTTCTGGAGATGATGTACCAGCTCCTCCCACACCAATACCAGATCCAAGAGATCAATCGCCTCACTCTTGCCTACTTCATCGTCTCTGGCGTCGACCTCCTCCATGCTCTCCACCGTGGTGCTGATATTCAACTTGGAATGGCAATTGATAGTATGAAAGAAGTAACTCTAGAATGGCAAGTGAAAACCAGAGGTCTTTACAAGAACTTGTTCCCCTTCCTTATTTTCCTTCTCGGTGATTCTCAAGCTGCTTCTCTGAATTTGGTAGCTGATTATGATTCTTTGTTTCAATTGGTGTTAAAGATGGCTAGCTTTACATACAATTTTAGGAGTCCTTTTGTATATGTGATATGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

122

Amino Acids

14.15

Weight (kDa)

6.25

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	137, 296
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	4 cut(s)	28, 254, 275, 318
AluI	AGCT	4 cut(s)	28, 254, 275, 318
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	254
AsuNHI	GCTAGC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	176, 315
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
BseDI	CCNNGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	20, 95
BseXI	GCAGC	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	48, 57
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	48, 57
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	51, 60
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	48, 57
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	316
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	28, 254, 275, 314, 318
CviKI_1	RGCY	5 cut(s)	28, 254, 275, 314, 318
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	50, 59
DpnII	GATC	2 cut(s)	48, 57
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	113
FaiI	YATR	7 cut(s)	111, 161, 282, 325, 349, 351, 358
FatI	CATG	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	176, 315
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	245, 284, 337
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	11, 176
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	232, 245
HpyCH4III	ACNGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	48, 57
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	38, 59, 78, 208
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	176, 315
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	50, 59
MboI	GATC	2 cut(s)	48, 57
MfeI	CAATTG	2 cut(s)	150, 296
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	4 cut(s)	150, 265, 296, 328
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	41, 77, 113, 116, 191
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	123
MunI	CAATTG	2 cut(s)	150, 296
NdeII	GATC	2 cut(s)	48, 57
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	245, 284
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	48, 57
SchI	GAGTC	1 cut(s)	346
SetI	ASST	6 cut(s)	30, 105, 202, 256, 277, 320
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	4 cut(s)	150, 265, 296, 328
SspMI	CTAG	2 cut(s)	176, 315
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	150, 265, 296, 328
TfiI	GAWTC	2 cut(s)	245, 284
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	73, 176
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	176, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.