WD repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001 |
| rosa_laevigata | RLG00000017465 RLG00000029281 RLG00000036286 |
| rosa_multiflora | Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140 |
| rosa_rugosa | Rorug01G0042500 Rorug04G0302000 |
| rosa_samantha | Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300 |
| rosa_wichuraiana | Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 118 |
| AfaI | GTAC | 2 cut(s) | 61, 107 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 175 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AleI | CACNNNNGTG | 1 cut(s) | 251 |
| AoxI | GGCC | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 206 |
| AsuHPI | GGTGA | 2 cut(s) | 85, 211 |
| BfaI | CTAG | 1 cut(s) | 287 |
| BmiI | GGNNCC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 2 cut(s) | 50, 191 |
| BsaBI | GATNNNNATC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 2 cut(s) | 74, 148 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 275 |
| BseDI | CCNNGG | 2 cut(s) | 74, 148 |
| BseJI | GATNNNNATC | 1 cut(s) | 275 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| Bsh1285I | CGRYCG | 1 cut(s) | 154 |
| BshFI | GGCC | 1 cut(s) | 157 |
| BsiEI | CGRYCG | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BsnI | GGCC | 1 cut(s) | 157 |
| Bsp143I | GATC | 2 cut(s) | 270, 276 |
| Bsp19I | CCATGG | 1 cut(s) | 74 |
| BspANI | GGCC | 1 cut(s) | 157 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspHI | TCATGA | 1 cut(s) | 273 |
| BspLI | GGNNCC | 1 cut(s) | 72 |
| BssECI | CCNNGG | 2 cut(s) | 74, 148 |
| BssMI | GATC | 2 cut(s) | 270, 276 |
| BssT1I | CCWWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 2 cut(s) | 110, 295 |
| Bst6I | CTCTTC | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 185 |
| BstDSI | CCRYGG | 1 cut(s) | 74 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 173 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstKTI | GATC | 2 cut(s) | 273, 279 |
| BstMBI | GATC | 2 cut(s) | 270, 276 |
| BstMCI | CGRYCG | 1 cut(s) | 154 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 124 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 157 |
| BtgI | CCRYGG | 1 cut(s) | 74 |
| Cac8I | GCNNGC | 1 cut(s) | 185 |
| CciI | TCATGA | 1 cut(s) | 273 |
| Csp6I | GTAC | 2 cut(s) | 60, 106 |
| CviAII | CATG | 2 cut(s) | 75, 274 |
| CviJI | RGCY | 6 cut(s) | 8, 23, 85, 147, 157, 235 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 23, 85, 147, 157, 235 |
| CviQI | GTAC | 2 cut(s) | 60, 106 |
| DpnI | GATC | 2 cut(s) | 272, 278 |
| DpnII | GATC | 2 cut(s) | 270, 276 |
| Eam1104I | CTCTTC | 1 cut(s) | 197 |
| EarI | CTCTTC | 1 cut(s) | 197 |
| Eco130I | CCWWGG | 1 cut(s) | 74 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 173 |
| EcoT14I | CCWWGG | 1 cut(s) | 74 |
| ErhI | CCWWGG | 1 cut(s) | 74 |
| FaeI | CATG | 2 cut(s) | 78, 277 |
| FaiI | YATR | 6 cut(s) | 64, 76, 132, 141, 213, 275 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 167, 199 |
| FatI | CATG | 2 cut(s) | 74, 273 |
| FspBI | CTAG | 1 cut(s) | 287 |
| HaeIII | GGCC | 1 cut(s) | 157 |
| Hin1II | CATG | 2 cut(s) | 78, 277 |
| HphI | GGTGA | 2 cut(s) | 85, 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 246 |
| Hpy188III | TCNNGA | 3 cut(s) | 164, 274, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 246 |
| HpyAV | CCTTC | 2 cut(s) | 169, 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 110, 295 |
| HpyCH4V | TGCA | 2 cut(s) | 187, 256 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 124 |
| Hsp92II | CATG | 2 cut(s) | 78, 277 |
| Kzo9I | GATC | 2 cut(s) | 270, 276 |
| LpnPI | CCDG | 3 cut(s) | 52, 109, 248 |
| MaeI | CTAG | 1 cut(s) | 287 |
| MalI | GATC | 2 cut(s) | 272, 278 |
| MboI | GATC | 2 cut(s) | 270, 276 |
| MboII | GAAGA | 1 cut(s) | 214 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MluCI | AATT | 2 cut(s) | 88, 249 |
| MnlI | CCTC | 4 cut(s) | 25, 75, 158, 168 |
| MroXI | GAANNNNTTC | 1 cut(s) | 206 |
| MseI | TTAA | 2 cut(s) | 87, 219 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| MunI | CAATTG | 1 cut(s) | 249 |
| MvnI | CGCG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 124 |
| NcoI | CCATGG | 1 cut(s) | 74 |
| NdeII | GATC | 2 cut(s) | 270, 276 |
| NlaIII | CATG | 2 cut(s) | 78, 277 |
| NlaIV | GGNNCC | 1 cut(s) | 72 |
| OliI | CACNNNNGTG | 1 cut(s) | 251 |
| PagI | TCATGA | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 1 cut(s) | 72 |
| RsaI | GTAC | 2 cut(s) | 61, 107 |
| RsaNI | GTAC | 2 cut(s) | 60, 106 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SaqAI | TTAA | 2 cut(s) | 87, 219 |
| Sau3AI | GATC | 2 cut(s) | 270, 276 |
| SetI | ASST | 5 cut(s) | 36, 46, 171, 201, 267 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| SmlI | CTYRAG | 2 cut(s) | 29, 170 |
| SmoI | CTYRAG | 2 cut(s) | 29, 170 |
| Sse9I | AATT | 2 cut(s) | 88, 249 |
| SspMI | CTAG | 1 cut(s) | 287 |
| StyI | CCWWGG | 1 cut(s) | 74 |
| TaaI | ACNGT | 2 cut(s) | 110, 295 |
| TaqI | TCGA | 1 cut(s) | 37 |
| TaqII | GACCGA | 1 cut(s) | 140 |
| TasI | AATT | 2 cut(s) | 88, 249 |
| Tru1I | TTAA | 2 cut(s) | 87, 219 |
| Tru9I | TTAA | 2 cut(s) | 87, 219 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 286 |
| XmnI | GAANNNNTTC | 1 cut(s) | 206 |
| XspI | CTAG | 1 cut(s) | 287 |