Rmu_sc0000498.1_g000011

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000498.1
OG0001770
Physical Location & Seq
Reverse (-)
53602 .. 57977
4376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000498.1_g000011.1.cds

Sequence Viewer

Length: 543 bp
atggctgcaaaacttctgcattctttagctgatgacatcccagatttgcagaagcaaataggatgcatgaatgagattttccaaattttcgattcagaagacgtggagatggctgcaaaacttctgcattctttagctgatgacaacccagatttgcagaagcaaataggatgcatgaatgggattttccaaattttcgatcgacaccaagtcctcactggtaggaggattagccaccgcaagaggcttcttccagggaattcgcactatagcaatggtggcctggaaagagagtccaacaatccctaccattggcaagcgggtaaacatggtatcaagaaacaaccgtttcagcttcctgatttcattgctgcaactgttgacgacaatcttggagatgttgttgcagtgcattcggcagagctctggtatgctgctcggcgcttagattctctctccaaaggtttgattttaagagggtctatagttttggggttaaggtttctttcctatttggattgcacaaatggagtctctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

180

Amino Acids

20.16

Weight (kDa)

6.49

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 238, 320
AcsI RAATTY 3 cut(s) 84, 192, 259
AfiI CCNNNNNNNGG 1 cut(s) 312
AhdI GACNNNNNGTC 1 cut(s) 209
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 2 cut(s) 253, 282
AluBI AGCT 4 cut(s) 29, 137, 355, 424
AluI AGCT 4 cut(s) 29, 137, 355, 424
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 538
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 4 cut(s) 5, 113, 371, 434
ApoI RAATTY 3 cut(s) 84, 192, 259
AspLEI GCGC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 100, 358, 421
BccI CCATC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 2 cut(s) 255, 284
BcoDI GTCTC 1 cut(s) 538
BfmI CTRYAG 2 cut(s) 268, 483
BfoI RGCGCY 1 cut(s) 445
BisI GCNGC 4 cut(s) 6, 114, 372, 435
BlsI GCNGC 4 cut(s) 7, 115, 373, 436
Bme1390I CCNGG 2 cut(s) 255, 284
BmeRI GACNNNNNGTC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 255, 284
BmsI GCATC 2 cut(s) 53, 161
BpiI GAAGAC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 280, 366
BseBI CCWGG 2 cut(s) 255, 284
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 3 cut(s) 36, 68, 176
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 2 cut(s) 280, 366
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 100, 358, 421
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 538
BsmI GAATGC 3 cut(s) 19, 127, 412
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 238, 320
BspANI GGCC 1 cut(s) 282
BsrDI GCAATG 2 cut(s) 280, 366
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 255, 284
Bst4CI ACNGT 2 cut(s) 348, 379
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 445
BstF5I GGATG 3 cut(s) 36, 68, 176
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 255, 284
BstSCI CCNGG 2 cut(s) 253, 282
BstSFI CTRYAG 2 cut(s) 268, 483
BstV1I GCAGC 3 cut(s) 100, 358, 421
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 282
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 36, 68, 176
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 216, 414
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 444
CviAII CATG 3 cut(s) 67, 175, 329
CviJI RGCY 9 cut(s) 5, 29, 113, 137, 234, 247, 282, 355, 424
CviKI_1 RGCY 9 cut(s) 5, 29, 113, 137, 234, 247, 282, 355, 424
DdeI CTNAG 1 cut(s) 445
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DriI GACNNNNNGTC 1 cut(s) 209
Eam1105I GACNNNNNGTC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 253, 282
EcoT22I ATGCAT 2 cut(s) 68, 176
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 3 cut(s) 70, 178, 332
FaiI YATR 6 cut(s) 68, 176, 270, 330, 432, 485
FatI CATG 3 cut(s) 66, 174, 328
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 6, 114, 372, 435
FokI GGATG 3 cut(s) 23, 75, 183
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 4 cut(s) 6, 114, 372, 435
GlaI GCGC 1 cut(s) 443
GluI GCNGC 4 cut(s) 6, 114, 372, 435
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 1 cut(s) 282
HhaI GCGC 1 cut(s) 444
Hin1II CATG 3 cut(s) 70, 178, 332
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 4 cut(s) 92, 293, 449, 531
Hpy166II GTNNAC 2 cut(s) 326, 382
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 337, 359
Hpy8I GTNNAC 2 cut(s) 326, 382
HpyCH4III ACNGT 2 cut(s) 348, 379
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 445
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 70, 178, 332
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 54, 162, 204, 240, 267, 269, 296, 372, 412
Lsp1109I GCAGC 3 cut(s) 100, 358, 421
LweI GCATC 2 cut(s) 53, 161
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 110, 242
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 84, 192, 259
MlyI GAGTC 2 cut(s) 302, 540
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 4 cut(s) 219, 224, 237, 470
Mph1103I ATGCAT 2 cut(s) 68, 176
MseI TTAA 2 cut(s) 473, 497
MspR9I CCNGG 2 cut(s) 255, 284
Mva1269I GAATGC 3 cut(s) 19, 127, 412
MvaI CCWGG 2 cut(s) 255, 284
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeII GATC 1 cut(s) 199
NlaIII CATG 3 cut(s) 70, 178, 332
NmeAIII GCCGAG 1 cut(s) 418
NsiI ATGCAT 2 cut(s) 68, 176
PctI GAATGC 3 cut(s) 19, 127, 412
PfeI GAWTC 2 cut(s) 92, 449
PkrI GCNGC 4 cut(s) 7, 115, 373, 436
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 2 cut(s) 301, 539
PpsI GAGTC 2 cut(s) 301, 539
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 253, 282
PspGI CCWGG 2 cut(s) 253, 282
PvuI CGATCG 1 cut(s) 202
SacI GAGCTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 473, 497
SatI GCNGC 4 cut(s) 6, 114, 372, 435
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 2 cut(s) 302, 540
ScrFI CCNGG 2 cut(s) 255, 284
SduI GDGCHC 1 cut(s) 426
SetI ASST 7 cut(s) 31, 105, 139, 357, 426, 466, 503
SfaNI GCATC 2 cut(s) 53, 161
SfcI CTRYAG 2 cut(s) 268, 483
Sse9I AATT 3 cut(s) 84, 192, 259
SsiI CCGC 2 cut(s) 238, 320
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 253, 282
TaaI ACNGT 2 cut(s) 348, 379
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 90, 198, 202
TasI AATT 3 cut(s) 84, 192, 259
TfiI GAWTC 2 cut(s) 92, 449
Tru1I TTAA 2 cut(s) 473, 497
Tru9I TTAA 2 cut(s) 473, 497
TscAI CASTG 2 cut(s) 223, 414
TseI GCWGC 4 cut(s) 5, 113, 371, 434
TspDTI ATGAA 3 cut(s) 83, 191, 355
TspRI CASTG 2 cut(s) 223, 414
XapI RAATTY 3 cut(s) 84, 192, 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
Zsp2I ATGCAT 2 cut(s) 68, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.