Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

10095570 .. 10096291

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCAGCTCCTCCCACACCAATACCAGATACAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTTGACCTCCTCCATGCTCTCCACCGCAATCGGCATGGTCCTCTTTATTCTCCTTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

63

Amino Acids

7.48

Weight (kDa)

6.38

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 51	1.2e-07	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 154
AfaI	GTAC	1 cut(s)	56
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BseGI	GGATG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	53, 128
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	97, 154
BspANI	GGCC	1 cut(s)	129
BssMI	GATC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	143, 164
CviJI	RGCY	3 cut(s)	13, 61, 129
CviKI_1	RGCY	3 cut(s)	13, 61, 129
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	146, 167
FaiI	YATR	2 cut(s)	144, 165
FatI	CATG	2 cut(s)	142, 163
FokI	GGATG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	146, 167
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	146, 167
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	29, 71, 92, 139
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	74, 110, 146, 149, 180
MspI	CCGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	146, 167
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	167
SetI	ASST	3 cut(s)	36, 63, 138
SinI	GGWCC	1 cut(s)	167
SsiI	CCGC	2 cut(s)	97, 154
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.