Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

12656492 .. 12661421

Gene Structure 4930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACCTTGTGGAGGTTAGTGAAGAATTGTCGCCATGACTCTGCTTCAAGTCATGACTCTGTTTCAGGTAAACATGGTATCGAGAAACAATCGTTTCAGCTTCCTGATTTCATTGCTACAACTGGTACTGAGAAAATTAGACAGTGGGAGAAGAAATCGCCGCCTCGCAAGGAGTCTCAGTGCAAACCCTATGGCATTTCACGAGGTCTATACCCTAATTTGCAGATTAGAGTTGTCAACGGTGTCCTGCCTATTGGTGACTATTCCTTTGCTAAGAATAACAAGGTGGCCTGTGCTAATTCAAAGAAGGCAGCTCAAAGGTCCATGAAAGTGCATTTGGTTCTGTTGGTGATGATCAGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

10.02

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	20 - 52	8.9e-06	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	48, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	2 cut(s)	100, 314
AluI	AGCT	2 cut(s)	100, 314
Alw26I	GTCTC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	269, 361
AvaII	GGWCC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	367
BisI	GCNGC	2 cut(s)	161, 312
BlsI	GCNGC	2 cut(s)	162, 313
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	120, 191
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	121, 190
BspHI	TCATGA	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	144, 242
BstDEI	CTNAG	3 cut(s)	129, 177, 273
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	149, 185
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	4 cut(s)	35, 53, 74, 325
CviJI	RGCY	3 cut(s)	100, 290, 314
CviKI_1	RGCY	3 cut(s)	100, 290, 314
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	3 cut(s)	129, 177, 273
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	38, 56, 77, 328
FaiI	YATR	6 cut(s)	36, 54, 75, 192, 211, 326
FatI	CATG	4 cut(s)	34, 52, 73, 324
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	161, 312
Fsp4HI	GCNGC	2 cut(s)	161, 312
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	2 cut(s)	161, 312
HaeIII	GGCC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	38, 56, 77, 328
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	38, 56, 173
HphI	GGTGA	2 cut(s)	269, 361
Hpy166II	GTNNAC	2 cut(s)	71, 238
Hpy188III	TCNNGA	4 cut(s)	53, 82, 104, 201
Hpy8I	GTNNAC	2 cut(s)	71, 238
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	144, 242
HpyCH4V	TGCA	3 cut(s)	183, 223, 334
HpyF3I	CTNAG	3 cut(s)	129, 177, 273
Hsp92II	CATG	4 cut(s)	38, 56, 77, 328
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LpnPI	CCDG	5 cut(s)	51, 108, 117, 260, 304
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	34, 163
MluCI	AATT	5 cut(s)	25, 135, 217, 298, 362
MlyI	GAGTC	3 cut(s)	32, 50, 182
MnlI	CCTC	3 cut(s)	6, 174, 197
MslI	CAYNNNNRTG	1 cut(s)	329
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	4 cut(s)	38, 56, 77, 328
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	162, 313
PleI	GAGTC	3 cut(s)	32, 50, 181
PpsI	GAGTC	3 cut(s)	32, 50, 181
PspPI	GGNCC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	2 cut(s)	161, 312
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	321
SchI	GAGTC	3 cut(s)	32, 50, 182
SetI	ASST	8 cut(s)	8, 17, 70, 102, 208, 288, 316, 323
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	25, 135, 217, 298, 362
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	144, 242
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	25, 135, 217, 298, 362
TauI	GCSGC	1 cut(s)	163
TscAI	CASTG	2 cut(s)	149, 185
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	100, 341
TspRI	CASTG	2 cut(s)	149, 185
VpaK11BI	GGWCC	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	10
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.