Rw4G029660

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001770
Physical Location & Seq
Reverse (-)
56362974 .. 56367000
4027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029660.1

Sequence Viewer

Length: 321 bp
ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGATTTTCCAAATTTTTGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTCGCACTATAGCAATGGTGGCCTGGAAAGAGAGTCCAACAATCCCTACCATTGGCAAGCAGTAACTGGTAAACATGGTATCAAGAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGTGCTGAGAAAATTAGACAGGGAGAAGTGGAAACCTATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

9.21

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 84, 151
AfiI CCNNNNNNNGG 1 cut(s) 204
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 2 cut(s) 145, 174
AluBI AGCT 2 cut(s) 29, 253
AluI AGCT 2 cut(s) 29, 253
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 5, 269
ApoI RAATTY 2 cut(s) 84, 151
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 147, 176
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 6, 270
BlsI GCNGC 2 cut(s) 7, 271
Bme1390I CCNGG 2 cut(s) 147, 176
BmeRI GACNNNNNGTC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 147, 176
BmsI GCATC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 115, 223, 280
Bse3DI GCAATG 2 cut(s) 172, 264
BseBI CCWGG 2 cut(s) 147, 176
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 2 cut(s) 172, 264
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 3 cut(s) 115, 223, 280
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 204
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 172, 264
BsrI ACTGG 3 cut(s) 115, 223, 280
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 147, 176
Bst4CI ACNGT 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 171, 278
BstNI CCWGG 2 cut(s) 147, 176
BstSCI CCNGG 2 cut(s) 145, 174
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 218
CviAII CATG 2 cut(s) 67, 227
CviJI RGCY 6 cut(s) 5, 29, 126, 139, 174, 253
CviKI_1 RGCY 6 cut(s) 5, 29, 126, 139, 174, 253
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DriI GACNNNNNGTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 145, 174
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 2 cut(s) 70, 230
FaiI YATR 3 cut(s) 68, 162, 228
FatI CATG 2 cut(s) 66, 226
Fnu4HI GCNGC 2 cut(s) 6, 270
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 6, 270
GluI GCNGC 2 cut(s) 6, 270
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 174
Hin1II CATG 2 cut(s) 70, 230
HinfI GANTC 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 235, 257
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 8, 19, 49, 66, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 278
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 70, 230
Kzo9I GATC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MluCI AATT 3 cut(s) 84, 151, 288
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 111, 116, 129, 153
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 147, 176
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 2 cut(s) 147, 176
MwoI GCNNNNNNNGC 2 cut(s) 171, 278
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 70, 230
NsiI ATGCAT 1 cut(s) 68
PctI GAATGC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 7, 271
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 145, 174
PspGI CCWGG 2 cut(s) 145, 174
PstNI CAGNNNCTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 2 cut(s) 6, 270
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 147, 176
SetI ASST 3 cut(s) 31, 255, 314
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 160
Sse9I AATT 3 cut(s) 84, 151, 288
StyD4I CCNGG 2 cut(s) 145, 174
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 94
TasI AATT 3 cut(s) 84, 151, 288
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 5, 269
TspDTI ATGAA 2 cut(s) 83, 253
TspRI CASTG 1 cut(s) 115
XapI RAATTY 2 cut(s) 84, 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.