Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

63003672 .. 63003963

Gene Structure 292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGAGAGCTTAATTTCACCAGAGATGAGTACCGTGAGGCGCAATTGAAGCAGTATAAGAACTATGAGAGCCTCGGTCATCCTCGTCAAGACCTCGAGAAGGAGTGCTTGCAAGTGGAGAAAGGGAAGAGTTTCTATGACTTTCACTACAACACAAGGCTTGTGAAGTCGACAATTGTACATTTTCAGGTAGAGATCATGATCTTGGTTCTCGTAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

74

Amino Acids

8.9

Weight (kDa)

6.27

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AfaI	GTAC	2 cut(s)	32, 180
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	195, 201
BspHI	TCATGA	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	195, 201
Bst4CI	ACNGT	2 cut(s)	35, 220
Bst6I	CTCTTC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	198, 204
BstMBI	GATC	2 cut(s)	195, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	31, 179
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	3 cut(s)	10, 72, 160
CviKI_1	RGCY	3 cut(s)	10, 72, 160
CviQI	GTAC	2 cut(s)	31, 179
DpnI	GATC	2 cut(s)	197, 203
DpnII	GATC	2 cut(s)	195, 201
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	202
FaiI	YATR	4 cut(s)	57, 66, 138, 200
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	89, 97, 199
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	35, 220
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	195, 201
LpnPI	CCDG	2 cut(s)	34, 173
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	197, 203
MboI	GATC	2 cut(s)	195, 201
MboII	GAAGA	1 cut(s)	139
MfeI	CAATTG	2 cut(s)	44, 174
MluCI	AATT	3 cut(s)	13, 44, 174
MnlI	CCTC	4 cut(s)	31, 83, 93, 104
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	12
MunI	CAATTG	2 cut(s)	44, 174
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	195, 201
NlaIII	CATG	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	32, 180
RsaNI	GTAC	2 cut(s)	31, 179
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	195, 201
SetI	ASST	3 cut(s)	12, 96, 192
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	13, 44, 174
TaaI	ACNGT	2 cut(s)	35, 220
TaqI	TCGA	2 cut(s)	96, 170
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	13, 44, 174
TatI	WGTACW	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.