Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

5508473 .. 5512850

Gene Structure 4378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAATCGACGGCAAAGAGGTCAAGGCCCAGATCTGGGACATGGCGGGACAAGAGCGCTTCCAGGCTGTCACGTCGGCTTACTACTTAGGCGCGGTGGGCGCGCTTGTAGTGTATGATATTGGTAGGAAGACCACTTTTGAGAGTGTGGAGCGCTGGCTTAATGAGCTTACCAATTCTATCCCTTTCCCCGAAAGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGGTAAACATGGTATCGAGAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGTACTGAGAAAATTAGACAGGGGGAATCTGCATTATGCAGACTTGCCTGGCACACATTAAATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

5.13

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	1 - 62	5.4e-19	Ras family
Roc	PF08477	5 - 60	4.7e-14	Ras of Complex, Roc, domain of DAPkinase
DUF382	PF04037	76 - 107	4.8e-06	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	95, 104
AciI	CCGC	2 cut(s)	47, 95
AfaI	GTAC	1 cut(s)	301
AfeI	AGCGCT	2 cut(s)	59, 155
AfiI	CCNNNNNNNGG	4 cut(s)	36, 37, 196, 238
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	63, 344
AluBI	AGCT	2 cut(s)	169, 274
AluI	AGCT	2 cut(s)	169, 274
Aor51HI	AGCGCT	2 cut(s)	59, 155
AoxI	GGCC	2 cut(s)	27, 198
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	5 cut(s)	60, 95, 104, 106, 156
AspS9I	GGNCC	2 cut(s)	28, 198
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	65, 346
BfoI	RGCGCY	2 cut(s)	61, 157
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	65, 346
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	28, 198
BmrFI	CCNGG	2 cut(s)	65, 346
BpiI	GAAGAC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 37, 196, 238
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	65, 346
BseLI	CCNNNNNNNGG	4 cut(s)	36, 37, 196, 238
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	301
BsePI	GCGCGC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	95, 104
BshFI	GGCC	2 cut(s)	29, 200
BslFI	GGGAC	2 cut(s)	53, 63
BslI	CCNNNNNNNGG	4 cut(s)	36, 37, 196, 238
BsmFI	GGGAC	2 cut(s)	53, 63
BsnI	GGCC	2 cut(s)	29, 200
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	47, 95
BspANI	GGCC	2 cut(s)	29, 200
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	95, 104
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	301
BssHII	GCGCGC	1 cut(s)	102
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	65, 346
Bst4CI	ACNGT	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	104, 158
BstDEI	CTNAG	2 cut(s)	88, 303
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstFNI	CGCG	2 cut(s)	95, 104
BstH2I	RGCGCY	2 cut(s)	61, 157
BstHHI	GCGC	5 cut(s)	60, 95, 104, 106, 156
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 101, 166
BstNI	CCWGG	2 cut(s)	65, 346
BstSCI	CCNGG	2 cut(s)	63, 344
BstUI	CGCG	2 cut(s)	95, 104
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	29, 200
BtrI	CACGTC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	104, 158
CfoI	GCGC	5 cut(s)	60, 95, 104, 106, 156
Cfr13I	GGNCC	2 cut(s)	28, 198
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	43, 202, 248
CviJI	RGCY	7 cut(s)	29, 68, 80, 160, 169, 200, 274
CviKI_1	RGCY	7 cut(s)	29, 68, 80, 160, 169, 200, 274
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	88, 303
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	220
Eco47III	AGCGCT	2 cut(s)	59, 155
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	63, 344
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	3 cut(s)	46, 205, 251
FaiI	YATR	5 cut(s)	44, 117, 203, 249, 334
FaqI	GGGAC	2 cut(s)	53, 63
FatI	CATG	3 cut(s)	42, 201, 247
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	5 cut(s)	59, 94, 103, 105, 155
GluI	GCNGC	1 cut(s)	291
HaeII	RGCGCY	2 cut(s)	61, 157
HaeIII	GGCC	2 cut(s)	29, 200
HhaI	GCGC	5 cut(s)	60, 95, 104, 106, 156
Hin1II	CATG	3 cut(s)	46, 205, 251
Hin6I	GCGC	5 cut(s)	58, 93, 102, 104, 154
HinP1I	GCGC	5 cut(s)	58, 93, 102, 104, 154
HinfI	GANTC	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	256, 278
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	2 cut(s)	14, 79
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	293, 329, 336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 101, 166
HpyF3I	CTNAG	2 cut(s)	88, 303
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	46, 205, 251
HspAI	GCGC	5 cut(s)	58, 93, 102, 104, 154
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	2 cut(s)	175, 309
MnlI	CCTC	3 cut(s)	13, 232, 233
MseI	TTAA	2 cut(s)	162, 356
MspR9I	CCNGG	2 cut(s)	65, 346
MvaI	CCWGG	2 cut(s)	65, 346
MvnI	CGCG	2 cut(s)	95, 104
MwoI	GCNNNNNNNGC	3 cut(s)	99, 101, 166
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	3 cut(s)	46, 205, 251
NmuCI	GTSAC	1 cut(s)	70
PauI	GCGCGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	63, 344
PspGI	CCWGG	2 cut(s)	63, 344
PspPI	GGNCC	2 cut(s)	28, 198
PsuI	RGATCY	1 cut(s)	33
PteI	GCGCGC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	162, 356
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	2 cut(s)	28, 198
ScrFI	CCNGG	2 cut(s)	65, 346
SetI	ASST	5 cut(s)	24, 77, 171, 234, 276
Sse9I	AATT	2 cut(s)	175, 309
SsiI	CCGC	2 cut(s)	47, 95
StyD4I	CCNGG	2 cut(s)	63, 344
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	9, 255
TasI	AATT	2 cut(s)	175, 309
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	162, 356
Tru9I	TTAA	2 cut(s)	162, 356
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.