Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

7106877 .. 7107584

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGGAGGTGGATGAGATGGCTGTCCGACTGGTTGCTTCTCTTGGACTGGCAGATATGCACAGGCCGGTGGATCTTTGGCTGGCTCGTGGAGAAGGTTTGCGGCGTTCGCAGACGTATCTGGTGGGGAAGCTGCTGACTGCTAGGGCTTTTAACAAAAGATTGTTCATGGGCATGTTTCGTCGTGCATGGAGATTGAATGGACAATACACCGCTCAGGAACATGGAGACCGGTTTCTCTTCACCTTGACGGATCCAACTGACCGCAACCGCATCCTTCGAGGTGGTCCTTGGGGTTTTGATAGAGCTCCGGTTGTCCTAGCACCATATGATGGGGTGGGAGCGATTAAGGATGTCCCGCTCTCTACCTTAGCCTTCTGGATCAAGGTACGTGGGCTGCCACCAGACTTTCATACCGATCAGTGCTTGAGAAGAATTGGCAGTGCTTTGGGGCGGTATATGCAGAAAGACATCACAGAGTTTGGAGAGGGAAGGATTCGGATCCGGGTTGAGATGGATCTTTTGCAGCCTGTGATTTTCCGACGTAGCTTCACGGTGGATGATGGGATTGACGTAGATCTGGATTTCTTCTTTGAAAACCTCTATGGAAGATGTCAAGATTGTGGTTTGCTTACTCATGTGGGTTTACCATGTGCGGGGCCGCCCTTGCCGGCGGAGGTCATGAGTGAACAGTCGCCGGCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

235

Amino Acids

26.69

Weight (kDa)

7.71

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	39 - 110	1.1e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	2 cut(s)	215, 361
AciI	CCGC	9 cut(s)	103, 213, 265, 271, 359, 454, 656, 662, 674
AclWI	GGATC	7 cut(s)	81, 248, 261, 389, 496, 509, 525
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	332, 656
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	199, 596
AluBI	AGCT	3 cut(s)	133, 308, 549
AluI	AGCT	3 cut(s)	133, 308, 549
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	7 cut(s)	81, 248, 261, 389, 496, 509, 525
AoxI	GGCC	2 cut(s)	65, 659
ApeKI	GCWGC	3 cut(s)	133, 397, 526
AsiGI	ACCGGT	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	287, 659
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	2 cut(s)	253, 501
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	120, 384, 538
BccI	CCATC	4 cut(s)	13, 326, 508, 557
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	144, 320
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	5 cut(s)	104, 134, 398, 527, 662
BlsI	GCNGC	5 cut(s)	105, 135, 399, 528, 663
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 659
BmiI	GGNNCC	3 cut(s)	255, 503, 660
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	1 cut(s)	282
Bpu10I	CCTNAGC	2 cut(s)	216, 370
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	2 cut(s)	231, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 656
Bse118I	RCCGGY	4 cut(s)	67, 231, 670, 697
Bse1I	ACTGG	2 cut(s)	36, 54
Bse8I	GATNNNNATC	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	4 cut(s)	19, 273, 358, 565
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	332, 656
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	36, 54
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	120, 384, 538
BshFI	GGCC	2 cut(s)	67, 661
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	6 cut(s)	68, 232, 311, 505, 671, 698
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	332, 656
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	67, 661
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
BspACI	CCGC	9 cut(s)	103, 213, 265, 271, 359, 454, 656, 662, 674
BspANI	GGCC	2 cut(s)	67, 661
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	255, 503, 660
BspPI	GGATC	7 cut(s)	81, 248, 261, 389, 496, 509, 525
BspTNI	GGTCTC	1 cut(s)	222
BsrBI	CCGCTC	2 cut(s)	215, 361
BsrFI	RCCGGY	4 cut(s)	67, 231, 670, 697
BsrI	ACTGG	2 cut(s)	36, 54
BssAI	RCCGGY	4 cut(s)	67, 231, 670, 697
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	556, 693, 705
Bst6I	CTCTTC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	84, 672, 699
BstDEI	CTNAG	2 cut(s)	216, 370
BstF5I	GGATG	4 cut(s)	19, 273, 358, 565
BstKTI	GATC	7 cut(s)	76, 256, 384, 421, 504, 520, 580
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 460, 667
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	120, 384, 538
BstX2I	RGATCY	5 cut(s)	73, 253, 501, 517, 577
BstYI	RGATCY	5 cut(s)	73, 253, 501, 517, 577
BsuRI	GGCC	2 cut(s)	67, 661
BtsCI	GGATG	4 cut(s)	19, 273, 358, 565
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	428, 448
Cac8I	GCNNGC	3 cut(s)	84, 672, 699
CciI	TCATGA	1 cut(s)	681
Cfr10I	RCCGGY	4 cut(s)	67, 231, 670, 697
Cfr13I	GGNCC	2 cut(s)	287, 659
Csp6I	GTAC	1 cut(s)	389
CspAI	ACCGGT	1 cut(s)	231
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	7 cut(s)	169, 175, 189, 224, 638, 651, 682
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	216, 370
DpnI	GATC	7 cut(s)	75, 255, 383, 420, 503, 519, 579
DpnII	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	7 cut(s)	172, 178, 192, 227, 641, 654, 685
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	7 cut(s)	168, 174, 188, 223, 637, 650, 681
FauI	CCCGC	2 cut(s)	366, 649
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	5 cut(s)	104, 134, 398, 527, 662
FokI	GGATG	4 cut(s)	26, 260, 365, 572
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	5 cut(s)	104, 134, 398, 527, 662
FspBI	CTAG	2 cut(s)	144, 320
GluI	GCNGC	5 cut(s)	104, 134, 398, 527, 662
HaeIII	GGCC	2 cut(s)	67, 661
HapII	CCGG	6 cut(s)	68, 232, 311, 505, 671, 698
Hin1II	CATG	7 cut(s)	172, 178, 192, 227, 641, 654, 685
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	6 cut(s)	68, 232, 311, 505, 671, 698
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	647, 689
Hpy188I	TCNGA	3 cut(s)	29, 501, 542
Hpy188III	TCNNGA	5 cut(s)	218, 379, 581, 617, 682
Hpy8I	GTNNAC	2 cut(s)	647, 689
Hpy99I	CGWCG	2 cut(s)	186, 546
HpyAV	CCTTC	4 cut(s)	89, 287, 385, 486
HpyCH4III	ACNGT	3 cut(s)	556, 693, 705
HpyCH4IV	ACGT	4 cut(s)	116, 391, 544, 573
HpyCH4V	TGCA	4 cut(s)	61, 188, 463, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 460, 667
HpyF3I	CTNAG	2 cut(s)	216, 370
HpySE526I	ACGT	4 cut(s)	116, 391, 544, 573
Hsp92II	CATG	7 cut(s)	172, 178, 192, 227, 641, 654, 685
KroI	GCCGGC	2 cut(s)	670, 697
KroNI	GCCGGC	2 cut(s)	672, 699
Kzo9I	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
LmnI	GCTCC	2 cut(s)	313, 341
Lsp1109I	GCAGC	3 cut(s)	120, 384, 538
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	144, 320
MaeII	ACGT	4 cut(s)	116, 391, 544, 573
MalI	GATC	7 cut(s)	75, 255, 383, 420, 503, 519, 579
MbiI	CCGCTC	2 cut(s)	215, 361
MboI	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
MboII	GAAGA	4 cut(s)	232, 444, 580, 621
MflI	RGATCY	5 cut(s)	73, 253, 501, 517, 577
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	435
MmeI	TCCRAC	3 cut(s)	52, 281, 565
MnlI	CCTC	4 cut(s)	275, 481, 611, 670
MroNI	GCCGGC	2 cut(s)	670, 697
MseI	TTAA	2 cut(s)	153, 348
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	6 cut(s)	68, 232, 311, 505, 671, 698
MspR9I	CCNGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	109, 460, 667
NaeI	GCCGGC	2 cut(s)	672, 699
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
NgoMIV	GCCGGC	2 cut(s)	670, 697
NlaIII	CATG	7 cut(s)	172, 178, 192, 227, 641, 654, 685
NlaIV	GGNNCC	3 cut(s)	255, 503, 660
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	681
PdiI	GCCGGC	2 cut(s)	672, 699
PfeI	GAWTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	5 cut(s)	105, 135, 399, 528, 663
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	255, 503, 660
PspPI	GGNCC	2 cut(s)	287, 659
PsuI	RGATCY	5 cut(s)	73, 253, 501, 517, 577
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	153, 348
SatI	GCNGC	5 cut(s)	104, 134, 398, 527, 662
Sau3AI	GATC	7 cut(s)	73, 253, 381, 418, 501, 517, 577
Sau96I	GGNCC	2 cut(s)	287, 659
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	9 cut(s)	103, 213, 265, 271, 359, 454, 656, 662, 674
SspMI	CTAG	2 cut(s)	144, 320
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	3 cut(s)	556, 693, 705
TaiI	ACGT	4 cut(s)	119, 394, 547, 576
TaqI	TCGA	1 cut(s)	280
TasI	AATT	1 cut(s)	435
TauI	GCSGC	2 cut(s)	106, 664
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	153, 348
Tru9I	TTAA	2 cut(s)	153, 348
TscAI	CASTG	2 cut(s)	428, 448
TseI	GCWGC	3 cut(s)	133, 397, 526
TspDTI	ATGAA	2 cut(s)	157, 401
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	428, 448
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	2 cut(s)	144, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.