Rh1AG075400

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001770
Physical Location & Seq
Forward (+)
12460009 .. 12471779
11771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG075400.1

Sequence Viewer

Length: 255 bp
ATGGCCTCGGGTAGACGGATCGGTGTTTTTATTGCTTTATGGAAAGAGCTCACTAATGAATATCAGTACGAGGAAGAATATGTATTGCTTGATCTTGGTTCACTTTCCTCACAGCTTCAGATACCAGCAAACGCACCATATGTTCTTTCAGGTAAACACGGTATCGAGAAACAACTGTTTCAGCTCCCTGATTTCATTGCTGCAACTGGTACTGAGAAAATTAGACTGTGTTTGAATGAAGAATCAGAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

4.7

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF382 PF04037 29 - 82 5.6e-06 Domain of unknown function (DUF382)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 13
AclWI GGATC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 68, 211
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 252
AluBI AGCT 3 cut(s) 49, 115, 184
AluI AGCT 3 cut(s) 49, 115, 184
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 7
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 242
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 18, 91
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 18, 91
Bst4CI ACNGT 3 cut(s) 161, 177, 228
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 2 cut(s) 21, 94
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 18, 91
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 67, 210
CviJI RGCY 4 cut(s) 5, 49, 115, 184
CviKI_1 RGCY 4 cut(s) 5, 49, 115, 184
CviQI GTAC 2 cut(s) 67, 210
DdeI CTNAG 1 cut(s) 213
DpnI GATC 2 cut(s) 20, 93
DpnII GATC 2 cut(s) 18, 91
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 242
FaiI YATR 4 cut(s) 40, 81, 139, 141
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 14, 101, 155
Hpy188I TCNGA 2 cut(s) 120, 247
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 14, 101, 155
HpyCH4III ACNGT 3 cut(s) 161, 177, 228
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 251
Kzo9I GATC 2 cut(s) 18, 91
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 135, 138, 192, 201
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 1 cut(s) 251
MalI GATC 2 cut(s) 20, 93
MboI GATC 2 cut(s) 18, 91
MboII GAAGA 2 cut(s) 86, 251
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 219
MnlI CCTC 3 cut(s) 16, 64, 118
NdeI CATATG 1 cut(s) 139
NdeII GATC 2 cut(s) 18, 91
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 51
RsaI GTAC 2 cut(s) 68, 211
RsaNI GTAC 2 cut(s) 67, 210
SacI GAGCTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 18, 91
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 51, 117, 154, 186, 254
Sse9I AATT 1 cut(s) 219
SstI GAGCTC 1 cut(s) 51
TaaI ACNGT 3 cut(s) 161, 177, 228
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 242
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 72, 184, 252
TspGWI ACGGA 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.