No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001 |
| rosa_laevigata | RLG00000017465 RLG00000029281 RLG00000036286 |
| rosa_multiflora | Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140 |
| rosa_rugosa | Rorug01G0042500 Rorug04G0302000 |
| rosa_samantha | Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300 |
| rosa_wichuraiana | Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 103 |
| AcsI | RAATTY | 1 cut(s) | 27 |
| AluBI | AGCT | 1 cut(s) | 113 |
| AluI | AGCT | 1 cut(s) | 113 |
| Aor13HI | TCCGGA | 1 cut(s) | 103 |
| AoxI | GGCC | 1 cut(s) | 10 |
| ApoI | RAATTY | 1 cut(s) | 27 |
| AseI | ATTAAT | 1 cut(s) | 134 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| BbvCI | CCTCAGC | 1 cut(s) | 114 |
| BccI | CCATC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 1 cut(s) | 11 |
| BmsI | GCATC | 1 cut(s) | 160 |
| Bpu10I | CCTNAGC | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 7 |
| BsaWI | WCCGGW | 1 cut(s) | 103 |
| Bse1I | ACTGG | 1 cut(s) | 141 |
| BseAI | TCCGGA | 1 cut(s) | 103 |
| BseMII | CTCAG | 2 cut(s) | 78, 105 |
| BseNI | ACTGG | 1 cut(s) | 141 |
| BseYI | CCCAGC | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BsiSI | CCGG | 1 cut(s) | 104 |
| BsnI | GGCC | 1 cut(s) | 12 |
| Bsp13I | TCCGGA | 1 cut(s) | 103 |
| Bsp143I | GATC | 1 cut(s) | 127 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 2 cut(s) | 79, 106 |
| BspEI | TCCGGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 1 cut(s) | 11 |
| BsrI | ACTGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 1 cut(s) | 45 |
| BstDEI | CTNAG | 2 cut(s) | 87, 114 |
| BstKTI | GATC | 1 cut(s) | 130 |
| BstMBI | GATC | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| CviJI | RGCY | 3 cut(s) | 12, 80, 113 |
| CviKI_1 | RGCY | 3 cut(s) | 12, 80, 113 |
| DdeI | CTNAG | 2 cut(s) | 87, 114 |
| DpnI | GATC | 1 cut(s) | 129 |
| DpnII | GATC | 1 cut(s) | 127 |
| FaiI | YATR | 3 cut(s) | 15, 41, 57 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 157 |
| GsaI | CCCAGC | 1 cut(s) | 37 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| HapII | CCGG | 1 cut(s) | 104 |
| HinfI | GANTC | 1 cut(s) | 20 |
| HpaII | CCGG | 1 cut(s) | 104 |
| Hpy188I | TCNGA | 2 cut(s) | 88, 182 |
| Hpy188III | TCNNGA | 2 cut(s) | 24, 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 48 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 114 |
| Kpn2I | TCCGGA | 1 cut(s) | 103 |
| Kzo9I | GATC | 1 cut(s) | 127 |
| LpnPI | CCDG | 3 cut(s) | 19, 117, 154 |
| LweI | GCATC | 1 cut(s) | 160 |
| MalI | GATC | 1 cut(s) | 129 |
| MboI | GATC | 1 cut(s) | 127 |
| MluCI | AATT | 3 cut(s) | 27, 131, 135 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MnlI | CCTC | 2 cut(s) | 109, 163 |
| MroI | TCCGGA | 1 cut(s) | 103 |
| MseI | TTAA | 2 cut(s) | 71, 134 |
| MspI | CCGG | 1 cut(s) | 104 |
| NdeII | GATC | 1 cut(s) | 127 |
| NlaIV | GGNNCC | 1 cut(s) | 11 |
| PleI | GAGTC | 1 cut(s) | 14 |
| PpsI | GAGTC | 1 cut(s) | 14 |
| PshBI | ATTAAT | 1 cut(s) | 134 |
| PspFI | CCCAGC | 1 cut(s) | 33 |
| PspN4I | GGNNCC | 1 cut(s) | 11 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| SaqAI | TTAA | 2 cut(s) | 71, 134 |
| Sau3AI | GATC | 1 cut(s) | 127 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| SchI | GAGTC | 1 cut(s) | 14 |
| SetI | ASST | 1 cut(s) | 115 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SgeI | CNNG | 6 cut(s) | 36, 46, 116, 122, 134, 153 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse9I | AATT | 3 cut(s) | 27, 131, 135 |
| TaaI | ACNGT | 1 cut(s) | 45 |
| TasI | AATT | 3 cut(s) | 27, 131, 135 |
| Tru1I | TTAA | 2 cut(s) | 71, 134 |
| Tru9I | TTAA | 2 cut(s) | 71, 134 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TspGWI | ACGGA | 1 cut(s) | 77 |
| TspRI | CASTG | 1 cut(s) | 148 |
| VspI | ATTAAT | 1 cut(s) | 134 |
| XapI | RAATTY | 1 cut(s) | 27 |