Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

20775319 .. 20777008

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAAGTTGTGTACCTATTACTCAATGGCTTCCTATTAAACTCCACTGAGTTGTTATCTCAGAAGTGGAAAGAGCTATGGGGAAGGCTTGCTCAAAGCAACTTCAGCCCCATCAGTACAGCTCAGGGTAAACATGGTATCGAGAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGTACTGAGAAAATTAGACAGGGGGAATCTGCATTATGGAATGAGGATCACTATGGGGCACTCATCCACCACCTCTTTTTAGTTCGCAACATACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

93

Amino Acids

10.66

Weight (kDa)

6.91

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	42 - 69	7.5e-06	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	88
AfaI	GTAC	3 cut(s)	14, 118, 187
AluBI	AGCT	3 cut(s)	76, 122, 160
AluI	AGCT	3 cut(s)	76, 122, 160
AlwI	GGATC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	39, 74, 137, 180
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	229
BspCNI	CTCAG	4 cut(s)	40, 73, 136, 181
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	48, 60, 123, 189
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 276
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	13, 117, 186
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	30, 76, 88, 108, 122, 160
CviKI_1	RGCY	6 cut(s)	30, 76, 88, 108, 122, 160
CviQI	GTAC	3 cut(s)	13, 117, 186
DdeI	CTNAG	4 cut(s)	48, 60, 123, 189
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	88
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	79, 135, 220, 237, 275
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	13, 131
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	142, 164
Hpy8I	GTNNAC	2 cut(s)	13, 131
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	179, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 276
HpyF3I	CTNAG	4 cut(s)	48, 60, 123, 189
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	110, 168, 177, 188
Lsp1109I	GCAGC	1 cut(s)	163
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	2 cut(s)	220, 266
MseI	TTAA	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	105, 276
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	178
RsaI	GTAC	3 cut(s)	14, 118, 187
RsaNI	GTAC	3 cut(s)	13, 117, 186
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	18, 78, 124, 162, 258
SgeI	CNNG	7 cut(s)	101, 137, 146, 154, 176, 195, 215
Sse9I	AATT	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.