Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

14751357 .. 14754093

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATTCGGAGCCTTTCGCTAGAGAAAATAACGTGACTTTTACGGGGATGATGTACCAGCTCCTCCCACACCAATACCAGATCCAAGAGATCAACCGCCTCAATCTCGCCTACTTCGTCGTCTCCTGCCTCGACCTCCTCTATGCTCTCCACCGCCTAGAAATGGAAAAGACATACAGGGAATACCATGAGAGAGGCTTAATTTCACCGAGAGATAAGTACCGTGAGGCGCGATTGAAGCTGTATGTCAACTATGAGACCCTCGCTCGGCCTCGTCAAGACCTCGAGAAGGAGTGCTTGCAAGTGGAGAAGGGGAAAAGTTTGTATGACTTTCACTACAACACAAGGCTTGTCAAGTCGACAATTGTGCATTTTCAGGGTAAACACGGTATCGAGAAACAACCATTTCAGCTCCCTGATTTCATTGCTGCAACTAGTACTGAGAAAATTAGACAGACGTTCCTCAATAAGATAGGTCCTGAGGGGGAATCTGCATATGGAGACTTGCGTGGCACACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

20.48

Weight (kDa)

7.79

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	97, 154
AclWI	GGATC	1 cut(s)	76
AfaI	GTAC	3 cut(s)	56, 221, 439
AfiI	CCNNNNNNNGG	3 cut(s)	163, 267, 289
AgsI	TTSAA	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	3 cut(s)	61, 241, 412
AluI	AGCT	3 cut(s)	61, 241, 412
Alw26I	GTCTC	3 cut(s)	127, 251, 495
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BcoDI	GTCTC	3 cut(s)	127, 251, 495
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	3 cut(s)	21, 158, 435
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmcAI	AGTACT	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 267, 289
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	163, 267, 289
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	432, 471
BseRI	GAGGAG	2 cut(s)	53, 128
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	163, 267, 289
BsmAI	GTCTC	3 cut(s)	127, 251, 495
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	81, 90
BspACI	CCGC	2 cut(s)	97, 154
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	433, 472
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	423
BssMI	GATC	2 cut(s)	81, 90
Bst4CI	ACNGT	2 cut(s)	224, 389
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	441, 480
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	84, 93
BstMAI	GTCTC	3 cut(s)	127, 251, 495
BstMBI	GATC	2 cut(s)	81, 90
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	55, 220, 438
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	13, 61, 198, 241, 271, 349, 412
CviKI_1	RGCY	7 cut(s)	13, 61, 198, 241, 271, 349, 412
CviQI	GTAC	3 cut(s)	55, 220, 438
DdeI	CTNAG	2 cut(s)	441, 480
DpnI	GATC	2 cut(s)	83, 92
DpnII	GATC	2 cut(s)	81, 90
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	476
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	191
FaiI	YATR	8 cut(s)	144, 175, 189, 246, 255, 327, 496, 498
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	21, 158, 435
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	250, 360
HindII	GTYRAC	2 cut(s)	250, 360
HinfI	GANTC	2 cut(s)	5, 488
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	3 cut(s)	250, 360, 383
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	278, 286, 394, 479
Hpy8I	GTNNAC	3 cut(s)	250, 360, 383
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	283, 304
HpyCH4III	ACNGT	2 cut(s)	224, 389
HpyCH4IV	ACGT	2 cut(s)	33, 458
HpyCH4V	TGCA	4 cut(s)	301, 370, 431, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	2 cut(s)	441, 480
HpySE526I	ACGT	2 cut(s)	33, 458
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	81, 90
LmnI	GCTCC	3 cut(s)	10, 66, 417
LpnPI	CCDG	7 cut(s)	71, 92, 139, 163, 362, 429, 492
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	21, 158, 435
MaeII	ACGT	2 cut(s)	33, 458
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	83, 92
MboI	GATC	2 cut(s)	81, 90
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	3 cut(s)	201, 363, 447
MseI	TTAA	2 cut(s)	200, 520
MunI	CAATTG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	81, 90
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	5, 488
PkrI	GCNGC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	3 cut(s)	56, 221, 439
RsaNI	GTAC	3 cut(s)	55, 220, 438
SalI	GTCGAC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	200, 520
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	81, 90
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	439
SetI	ASST	8 cut(s)	36, 63, 138, 243, 285, 414, 461, 478
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	3 cut(s)	201, 363, 447
SsiI	CCGC	2 cut(s)	97, 154
SspMI	CTAG	3 cut(s)	21, 158, 435
TaaI	ACNGT	2 cut(s)	224, 389
TaiI	ACGT	2 cut(s)	36, 461
TaqI	TCGA	4 cut(s)	132, 285, 359, 393
TasI	AATT	3 cut(s)	201, 363, 447
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	5, 488
Tru1I	TTAA	2 cut(s)	200, 520
Tru9I	TTAA	2 cut(s)	200, 520
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	476
XagI	CCTNNNNNAGG	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	3 cut(s)	21, 158, 435
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.