Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

38341876 .. 38365517

Gene Structure 23642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAAATCATCGGCAAAGAGGTCAAGGCCCAGATCTGGGACATGGCGGGACAAGAGCGCTTCCAGGCTGTCACGTCGGCTTACTACTTAGGCGCGGTGGGCTCGCTTGTAGTGTATGATATTAGTAGGAAGACCACTTTTGCGAGTGTGGAGCGCTGGCTTAATGAGCTTACCAGTTTGAGAATCTCATGGGGAGATGTTCAAGATGCGACTGATCACTCATGTGGGTTTGTCATGTACGGGTCTGGCGTTGCTAGTAGAGGAACCTATGGAGTCGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

94

Amino Acids

10.29

Weight (kDa)

5.18

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 59	1.8e-17	Ras family
Roc	PF08477	6 - 59	4.3e-13	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	47, 95
AfaI	GTAC	1 cut(s)	239
AfeI	AGCGCT	2 cut(s)	59, 155
AfiI	CCNNNNNNNGG	2 cut(s)	36, 37
AgsI	TTSAA	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	63
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Aor51HI	AGCGCT	2 cut(s)	59, 155
AoxI	GGCC	1 cut(s)	27
AspLEI	GCGC	3 cut(s)	60, 95, 156
AspS9I	GGNCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	2 cut(s)	61, 157
BglII	AGATCT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	137
BsaXI	ACNNNNNCTCC	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 37
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	36, 37
BseNI	ACTGG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	53, 63
BslI	CCNNNNNNNGG	2 cut(s)	36, 37
BsmFI	GGGAC	2 cut(s)	53, 63
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	33, 214
BspACI	CCGC	2 cut(s)	47, 95
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	33, 214
Bst2UI	CCWGG	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	104, 158
BstDEI	CTNAG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	61, 157
BstHHI	GCGC	3 cut(s)	60, 95, 156
BstKTI	GATC	2 cut(s)	36, 217
BstMBI	GATC	2 cut(s)	33, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 166
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	104, 158
CfoI	GCGC	3 cut(s)	60, 95, 156
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	43, 189, 222, 235
CviJI	RGCY	6 cut(s)	29, 68, 80, 102, 160, 169
CviKI_1	RGCY	6 cut(s)	29, 68, 80, 102, 160, 169
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	35, 216
DpnII	GATC	2 cut(s)	33, 214
Eco24I	GRGCYC	1 cut(s)	104
Eco47III	AGCGCT	2 cut(s)	59, 155
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	4 cut(s)	46, 192, 225, 238
FaiI	YATR	6 cut(s)	44, 117, 190, 223, 236, 270
FaqI	GGGAC	2 cut(s)	53, 63
FatI	CATG	4 cut(s)	42, 188, 221, 234
FauI	CCCGC	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	3 cut(s)	59, 94, 155
HaeII	RGCGCY	2 cut(s)	61, 157
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	60, 95, 156
Hin1II	CATG	4 cut(s)	46, 192, 225, 238
Hin6I	GCGC	3 cut(s)	58, 93, 154
HinP1I	GCGC	3 cut(s)	58, 93, 154
HinfI	GANTC	2 cut(s)	183, 273
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 166
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	46, 192, 225, 238
HspAI	GCGC	3 cut(s)	58, 93, 154
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	33, 214
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	22, 44, 50, 77, 142, 187, 231
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	35, 216
MboI	GATC	2 cut(s)	33, 214
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	13, 254
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	99, 166
NdeII	GATC	2 cut(s)	33, 214
NlaIII	CATG	4 cut(s)	46, 192, 225, 238
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	33, 214
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	4 cut(s)	24, 77, 171, 269
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	222
SsiI	CCGC	2 cut(s)	47, 95
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.