Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

40303506 .. 40306683

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGATTTTCCAAATTTTTGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTCGCACTATAGCAATGGTGGCCTGGAAAGAGAGTCCAACAATCCCTACCATTGGCAAGCAGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAAGAATTTCTTACACATTGAATCTGGGAGAAGTGGAAACCTATCTTTAAAAAGCACATTTCTGGCCAAGTTTGTCGCGGTGGTTTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

9.61

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	84, 151, 271
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	259, 287
AhdI	GACNNNNNGTC	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	145, 174
AluBI	AGCT	2 cut(s)	29, 233
AluI	AGCT	2 cut(s)	29, 233
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	172, 330
ApeKI	GCWGC	2 cut(s)	5, 230
ApoI	RAATTY	3 cut(s)	84, 151, 271
BalI	TGGCCA	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	147, 176
BfmI	CTRYAG	2 cut(s)	160, 228
BisI	GCNGC	2 cut(s)	6, 231
BlsI	GCNGC	2 cut(s)	7, 232
Bme1390I	CCNGG	2 cut(s)	147, 176
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	147, 176
BmsI	GCATC	2 cut(s)	53, 211
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	147, 176
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	68, 226
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	174, 332
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	174, 332
Bsp143I	GATC	2 cut(s)	91, 235
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	174, 332
BspFNI	CGCG	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	91, 235
Bst2UI	CCWGG	2 cut(s)	147, 176
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	68, 226
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	94, 238
BstMBI	GATC	2 cut(s)	91, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 230
BstNI	CCWGG	2 cut(s)	147, 176
BstSCI	CCNGG	2 cut(s)	145, 174
BstSFI	CTRYAG	2 cut(s)	160, 228
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	174, 332
BtsCI	GGATG	2 cut(s)	68, 226
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	108, 219
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	5, 29, 126, 139, 174, 233, 332
CviKI_1	RGCY	7 cut(s)	5, 29, 126, 139, 174, 233, 332
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	2 cut(s)	93, 237
DpnII	GATC	2 cut(s)	91, 235
DraI	TTTAAA	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	145, 174
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 162
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	6, 231
FokI	GGATG	2 cut(s)	75, 233
Fsp4HI	GCNGC	2 cut(s)	6, 231
GluI	GCNGC	2 cut(s)	6, 231
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	174, 332
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	2 cut(s)	185, 287
HpyCH4V	TGCA	6 cut(s)	8, 19, 49, 66, 224, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 230
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	91, 235
LpnPI	CCDG	9 cut(s)	54, 96, 132, 159, 161, 188, 233, 276, 314
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	53, 211
MalI	GATC	2 cut(s)	93, 237
MboI	GATC	2 cut(s)	91, 235
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	4 cut(s)	84, 151, 242, 271
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	111, 116, 129, 153
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	147, 176
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	147, 176
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	171, 230
NdeII	GATC	2 cut(s)	91, 235
NlaIII	CATG	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	68
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	7, 232
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	145, 174
PspGI	CCWGG	2 cut(s)	145, 174
PstI	CTGCAG	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	6, 231
Sau3AI	GATC	2 cut(s)	91, 235
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	147, 176
SetI	ASST	3 cut(s)	31, 235, 309
SfaNI	GCATC	2 cut(s)	53, 211
SfcI	CTRYAG	2 cut(s)	160, 228
Sse9I	AATT	4 cut(s)	84, 151, 242, 271
SsiI	CCGC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	145, 174
TaqI	TCGA	1 cut(s)	94
TasI	AATT	4 cut(s)	84, 151, 242, 271
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	115, 219
TseI	GCWGC	2 cut(s)	5, 230
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	115, 219
XapI	RAATTY	3 cut(s)	84, 151, 271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.