Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

21295333 .. 21298854

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCTTATTCAAGAAAGCTCAGGTATCCCATCACAGGTCATGCACTAAACTTGGAGTTATGACAGCTTCTCAGCGCAATATAAGGCCCAATATGTTGATTGGGGGATATAGGCATAATTGGGACCTGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACACTAAATCTGACACAGAGAAGTTCTATATTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGCTGGGAAAGAAAGCAATAGAAGCTGCTCGGGTGTGGGATGCAACCGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACATTGAATCTGGGAGAAGTGGAAACCTATCTTTAAAAAGCACATTTCTGGCCAAGTTTGTCGTGGTGGTTTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

10.04

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	2 cut(s)	146, 344
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	187, 385
AfaI	GTAC	3 cut(s)	182, 257, 380
AfiI	CCNNNNNNNGG	2 cut(s)	36, 133
AgsI	TTSAA	6 cut(s)	13, 175, 230, 283, 373, 401
AjnI	CCWGG	2 cut(s)	126, 234
AluBI	AGCT	5 cut(s)	20, 68, 149, 320, 347
AluI	AGCT	5 cut(s)	20, 68, 149, 320, 347
AlwI	GGATC	2 cut(s)	146, 344
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	86, 444
ApeKI	GCWGC	3 cut(s)	146, 320, 344
ApoI	RAATTY	2 cut(s)	187, 385
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	87, 124
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	158, 307, 356
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	128, 236
BciVI	GTATCC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	147, 321, 345
BlsI	GCNGC	3 cut(s)	148, 322, 346
Bme1390I	CCNGG	2 cut(s)	128, 236
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	87, 124
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	128, 236
BmsI	GCATC	3 cut(s)	127, 285, 325
Bpu10I	CCTNAGC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 133
BseBI	CCWGG	2 cut(s)	128, 236
BseGI	GGATG	2 cut(s)	142, 340
BseLI	CCNNNNNNNGG	2 cut(s)	36, 133
BseMII	CTCAG	2 cut(s)	35, 86
BseXI	GCAGC	3 cut(s)	158, 307, 356
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	2 cut(s)	88, 446
BsiHKCI	CYCGRG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	36, 133
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	88, 446
BsoBI	CYCGRG	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	151, 349
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	88, 446
BspCNI	CTCAG	2 cut(s)	34, 85
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	2 cut(s)	146, 344
BssMI	GATC	2 cut(s)	151, 349
Bst2UI	CCWGG	2 cut(s)	128, 236
BstDEI	CTNAG	2 cut(s)	21, 72
BstF5I	GGATG	2 cut(s)	142, 340
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	154, 352
BstMBI	GATC	2 cut(s)	151, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 284, 317, 344
BstNI	CCWGG	2 cut(s)	128, 236
BstSCI	CCNGG	2 cut(s)	126, 234
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	158, 307, 356
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	88, 446
BtsCI	GGATG	2 cut(s)	142, 340
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	87, 124
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	3 cut(s)	181, 256, 379
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	8 cut(s)	20, 68, 88, 149, 278, 320, 347, 446
CviKI_1	RGCY	8 cut(s)	20, 68, 88, 149, 278, 320, 347, 446
CviQI	GTAC	3 cut(s)	181, 256, 379
DdeI	CTNAG	2 cut(s)	21, 72
DpnI	GATC	2 cut(s)	153, 351
DpnII	GATC	2 cut(s)	151, 349
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	126, 234
FaeI	CATG	1 cut(s)	45
FaiI	YATR	8 cut(s)	43, 62, 83, 95, 111, 117, 225, 245
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	147, 321, 345
FokI	GGATG	2 cut(s)	149, 347
Fsp4HI	GCNGC	3 cut(s)	147, 321, 345
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	3 cut(s)	147, 321, 345
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	88, 446
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	401
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	13
HpyCH4V	TGCA	4 cut(s)	45, 140, 146, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 284, 317, 344
HpyF3I	CTNAG	2 cut(s)	21, 72
Hsp92II	CATG	1 cut(s)	45
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	151, 349
Lsp1109I	GCAGC	3 cut(s)	158, 307, 356
LweI	GCATC	3 cut(s)	127, 285, 325
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	252
MalI	GATC	2 cut(s)	153, 351
MboI	GATC	2 cut(s)	151, 349
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	6 cut(s)	118, 158, 187, 240, 356, 385
MluNI	TGGCCA	1 cut(s)	446
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	149, 347
MspR9I	CCNGG	2 cut(s)	128, 236
MvaI	CCWGG	2 cut(s)	128, 236
MwoI	GCNNNNNNNGC	4 cut(s)	146, 284, 317, 344
NdeII	GATC	2 cut(s)	151, 349
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	148, 322, 346
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	126, 234
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	2 cut(s)	126, 234
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	87, 124
PspPPI	RGGWCCY	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	148
PvuII	CAGCTG	2 cut(s)	149, 347
RsaI	GTAC	3 cut(s)	182, 257, 380
RsaNI	GTAC	3 cut(s)	181, 256, 379
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	3 cut(s)	147, 321, 345
Sau3AI	GATC	2 cut(s)	151, 349
Sau96I	GGNCC	2 cut(s)	87, 124
ScrFI	CCNGG	2 cut(s)	128, 236
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	3 cut(s)	127, 285, 325
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	6 cut(s)	118, 158, 187, 240, 356, 385
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	126, 234
TasI	AATT	6 cut(s)	118, 158, 187, 240, 356, 385
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseI	GCWGC	3 cut(s)	146, 320, 344
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	187, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.