Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

218853 .. 219268

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000389.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgatgtaccggctcctcccacaccagtaccagacccaagagatcaaccgcctcactctcgcctacttcgtcgtctccggcctcgacctcctccgcgctttccaccgcggatctttttgctttaattacgcaaccggtgggccagggagcatgcagtcccagcagtcttggacggtggacggcgccggtgagggtcttgggatcgacatggttgcgagagagagagagagagagagagaaggctcctccgcttcttgtggtgagctgaagagaaaaggatctcaggtcattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

7.82

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	2 cut(s)	96, 108
AciI	CCGC	5 cut(s)	49, 94, 106, 108, 249
AclWI	GGATC	3 cut(s)	118, 209, 286
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	8, 29
AgeI	ACCGGT	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	3 cut(s)	118, 209, 286
AoxI	GGCC	2 cut(s)	79, 140
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	98, 185
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	200, 272
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BanI	GGYRCC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	14, 184, 244
BmrFI	CCNGG	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	106, 143
BsaWI	WCCGGW	1 cut(s)	134
Bse118I	RCCGGY	3 cut(s)	9, 134, 185
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	106, 143
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	5, 80, 235
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	96, 108
BshFI	GGCC	2 cut(s)	81, 142
BshNI	GGYRCC	1 cut(s)	182
BshTI	ACCGGT	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	10, 78, 135, 186
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	81, 142
Bsp143I	GATC	4 cut(s)	42, 110, 201, 278
BspACI	CCGC	5 cut(s)	49, 94, 106, 108, 249
BspANI	GGCC	2 cut(s)	81, 142
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	96, 108
BspLI	GGNNCC	3 cut(s)	14, 184, 244
BspPI	GGATC	3 cut(s)	118, 209, 286
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	3 cut(s)	9, 134, 185
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	3 cut(s)	9, 134, 185
BssECI	CCNNGG	2 cut(s)	106, 143
BssMI	GATC	4 cut(s)	42, 110, 201, 278
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	96, 108
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	98, 185
BstKTI	GATC	4 cut(s)	45, 113, 204, 281
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	42, 110, 201, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	96, 108
BstX2I	RGATCY	2 cut(s)	110, 278
BstYI	RGATCY	2 cut(s)	110, 278
BsuRI	GGCC	2 cut(s)	81, 142
BtgI	CCRYGG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	2 cut(s)	98, 185
Cfr10I	RCCGGY	3 cut(s)	9, 134, 185
Cfr13I	GGNCC	1 cut(s)	140
Cfr42I	CCGCGG	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	7, 28
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	151, 208
CviJI	RGCY	5 cut(s)	13, 81, 142, 243, 265
CviKI_1	RGCY	5 cut(s)	13, 81, 142, 243, 265
CviQI	GTAC	2 cut(s)	7, 28
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	4 cut(s)	44, 112, 203, 280
DpnII	GATC	4 cut(s)	42, 110, 201, 278
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	154, 211
FaiI	YATR	2 cut(s)	152, 209
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	150, 207
GlaI	GCGC	2 cut(s)	97, 184
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	81, 142
HapII	CCGG	4 cut(s)	10, 78, 135, 186
HhaI	GCGC	2 cut(s)	98, 185
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	154, 211
Hin6I	GCGC	2 cut(s)	96, 183
HinP1I	GCGC	2 cut(s)	96, 183
HpaII	CCGG	4 cut(s)	10, 78, 135, 186
HphI	GGTGA	2 cut(s)	200, 272
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	154, 211
HspAI	GCGC	2 cut(s)	96, 183
KasI	GGCGCC	1 cut(s)	182
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	42, 110, 201, 278
LmnI	GCTCC	3 cut(s)	18, 147, 248
MalI	GATC	4 cut(s)	44, 112, 203, 280
MboI	GATC	4 cut(s)	42, 110, 201, 278
MboII	GAAGA	1 cut(s)	280
MflI	RGATCY	2 cut(s)	110, 278
MluCI	AATT	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	26, 62, 92, 98, 101, 184, 256
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	4 cut(s)	10, 78, 135, 186
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	2 cut(s)	96, 108
MwoI	GCNNNNNNNGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	183
NdeII	GATC	4 cut(s)	42, 110, 201, 278
NlaIII	CATG	2 cut(s)	154, 211
NlaIV	GGNNCC	3 cut(s)	14, 184, 244
NspI	RCATGY	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	14, 184, 244
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	110, 278
RsaI	GTAC	2 cut(s)	8, 29
RsaNI	GTAC	2 cut(s)	7, 28
SacII	CCGCGG	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	42, 110, 201, 278
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	3 cut(s)	90, 267, 288
SfoI	GGCGCC	1 cut(s)	184
Sfr303I	CCGCGG	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	109
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	5 cut(s)	49, 94, 106, 108, 249
SspDI	GGCGCC	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	84, 204
TasI	AATT	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.