Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

22578306 .. 22585701

Gene Structure 7396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCCATGAAACAGATTTTGCCAATGATAGTGTGGGATGCAACTACCGCTGATCCTAAATTGCTGGGTAAACATGGTATCGAGAAACAACCGTTTCAACTACCTGATTTCATTGCTGCAACTGGTACTGAGAAAATTAGACAGGCCACATGGGAACTTGATCGAACTTGTAAAAATTATTATGAGAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

64

Amino Acids

7.33

Weight (kDa)

6.54

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	21 - 54	9.5e-07	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	98
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	3, 144
ApeKI	GCWGC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	5, 146
BsnI	GGCC	2 cut(s)	5, 146
Bsp143I	GATC	2 cut(s)	52, 160
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	5, 146
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	52, 160
Bst4CI	ACNGT	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	55, 163
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	5, 146
BtsCI	GGATG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	7, 74, 150
CviJI	RGCY	2 cut(s)	5, 146
CviKI_1	RGCY	2 cut(s)	5, 146
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
EaeI	YGGCCR	1 cut(s)	3
FaeI	CATG	3 cut(s)	10, 77, 153
FaiI	YATR	4 cut(s)	8, 75, 151, 183
FatI	CATG	3 cut(s)	6, 73, 149
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	5, 146
Hin1II	CATG	3 cut(s)	10, 77, 153
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	41, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	10, 77, 153
Kzo9I	GATC	2 cut(s)	52, 160
LpnPI	CCDG	4 cut(s)	50, 108, 117, 128
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	28
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	59, 135, 175
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	3 cut(s)	10, 77, 153
PkrI	GCNGC	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	52, 160
SetI	ASST	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	3 cut(s)	59, 135, 175
SsiI	CCGC	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	81, 163
TasI	AATT	3 cut(s)	59, 135, 175
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	23, 100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.