Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

52262977 .. 52263550

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGTTGATTGGGGGACATAGGCATAATTGGGACCTGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACACCGAATCTGGCCAGGAATTTCTTACTAGTAATAGGTGTTTGGCAAAAGTCACCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

55

Amino Acids

6.33

Weight (kDa)

6.81

Isoelectric Point (pI)

19.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	94, 122
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	82
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	33, 117
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	94, 122
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	35, 119
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	35, 119
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	35, 119
BmsI	GCATC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	35, 119
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	27, 44
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	27, 44
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	53
BssMI	GATC	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	35, 119
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	35, 119
BstSCI	CCNGG	2 cut(s)	33, 117
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	31
CsiI	ACCWGGT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	2 cut(s)	56, 117
CviKI_1	RGCY	2 cut(s)	56, 117
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	33, 117
FaiI	YATR	2 cut(s)	18, 24
FalI	AAGNNNNNCTT	1 cut(s)	144
FaqI	GGGAC	2 cut(s)	27, 44
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	47, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	20, 47, 56, 76, 99, 104, 131
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	34
MabI	ACCWGGT	1 cut(s)	33
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	4 cut(s)	25, 65, 94, 122
MluNI	TGGCCA	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	35, 119
MvaI	CCWGG	2 cut(s)	35, 119
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	33, 117
PspGI	CCWGG	2 cut(s)	33, 117
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	35, 119
SetI	ASST	3 cut(s)	36, 58, 143
SexAI	ACCWGGT	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	51
SgeI	CNNG	8 cut(s)	46, 47, 83, 103, 126, 130, 131, 144
SinI	GGWCC	1 cut(s)	31
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	4 cut(s)	25, 65, 94, 122
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	33, 117
TasI	AATT	4 cut(s)	25, 65, 94, 122
TfiI	GAWTC	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	94, 122
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.