Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

916672 .. 916945

Gene Structure 274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATGTACCAGCTCCTCCCACACCAATACCAGATCCAAGAGATCAATCGCCTCACTCTTGCCTACTTCATCGTCTCCGGCCTCGATCTCCTCCATGCTCTCCACCGCGACGCAGTTGCGGATTGGGTTTTGTCACTAGCTAACCCCGGAGACAGCGACCAAGTCAACAATGGTATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

60

Amino Acids

6.81

Weight (kDa)

4.77

Isoelectric Point (pI)

14.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	2 - 48	6e-06	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	106, 119
AclWI	GGATC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	8
AluBI	AGCT	2 cut(s)	13, 140
AluI	AGCT	2 cut(s)	13, 140
Alw26I	GTCTC	2 cut(s)	79, 144
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	79, 144
BfaI	CTAG	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	5, 80
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	78, 147
BsmAI	GTCTC	2 cut(s)	79, 144
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	33, 42, 85
BspACI	CCGC	2 cut(s)	106, 119
BspANI	GGCC	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	33, 42, 85
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	36, 45, 88
BstMAI	GTCTC	2 cut(s)	79, 144
BstMBI	GATC	3 cut(s)	33, 42, 85
BstSCI	CCNGG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	81
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	3 cut(s)	13, 81, 140
CviKI_1	RGCY	3 cut(s)	13, 81, 140
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	3 cut(s)	35, 44, 87
DpnII	GATC	3 cut(s)	33, 42, 85
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FatI	CATG	1 cut(s)	94
FspBI	CTAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	78, 147
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	78, 147
Hpy166II	GTNNAC	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	33, 42, 85
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	23, 44, 91, 160
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	3 cut(s)	35, 44, 87
MboI	GATC	3 cut(s)	33, 42, 85
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	4 cut(s)	26, 62, 92, 101
MseI	TTAA	1 cut(s)	177
MspI	CCGG	2 cut(s)	78, 147
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	108
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	33, 42, 85
NlaIII	CATG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	33, 42, 85
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	2 cut(s)	15, 142
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	106, 119
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	145
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	132
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	161
VspI	ATTAAT	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.