RchiOBHm_Chr5g0047881

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001770
Physical Location & Seq
Forward (+)
44418007 .. 44422215
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32573

Sequence Viewer

Length: 303 bp
ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGATTTTCCAAATTTTCGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTTGCACTATAGCAATGGTGGCCTGGAAAGAGAGTCCAACAATCCCTACCATTGGCAAGCGGTAACTGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAAGAATTTCTTACACATTGAATCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

100

Amino Acids

11.39

Weight (kDa)

8.86

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 3 cut(s) 84, 151, 277
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 265, 293
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 2 cut(s) 145, 174
AluBI AGCT 2 cut(s) 29, 239
AluI AGCT 2 cut(s) 29, 239
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 5, 236
ApoI RAATTY 3 cut(s) 84, 151, 277
BbvI GCAGC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 147, 176
BfmI CTRYAG 2 cut(s) 160, 234
BisI GCNGC 2 cut(s) 6, 237
BlsI GCNGC 2 cut(s) 7, 238
Bme1390I CCNGG 2 cut(s) 147, 176
BmeRI GACNNNNNGTC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 147, 176
BmsI GCATC 2 cut(s) 53, 217
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 147, 176
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 68, 232
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 204
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 91, 241
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 91, 241
Bst2UI CCWGG 2 cut(s) 147, 176
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 2 cut(s) 68, 232
BstKTI GATC 2 cut(s) 94, 244
BstMBI GATC 2 cut(s) 91, 241
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 171, 236
BstNI CCWGG 2 cut(s) 147, 176
BstSCI CCNGG 2 cut(s) 145, 174
BstSFI CTRYAG 2 cut(s) 160, 234
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 68, 232
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 5, 29, 126, 139, 174, 239
CviKI_1 RGCY 6 cut(s) 5, 29, 126, 139, 174, 239
CviQI GTAC 1 cut(s) 271
DpnI GATC 2 cut(s) 93, 243
DpnII GATC 2 cut(s) 91, 241
DriI GACNNNNNGTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 145, 174
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 162
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 6, 237
FokI GGATG 2 cut(s) 75, 239
Fsp4HI GCNGC 2 cut(s) 6, 237
GluI GCNGC 2 cut(s) 6, 237
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 174
Hin1II CATG 1 cut(s) 70
HinfI GANTC 2 cut(s) 185, 293
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 7 cut(s) 8, 19, 49, 66, 157, 230, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 236
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 91, 241
LpnPI CCDG 8 cut(s) 54, 96, 132, 159, 161, 188, 239, 282
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 2 cut(s) 53, 217
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 93, 243
MboI GATC 2 cut(s) 91, 241
MluCI AATT 4 cut(s) 84, 151, 248, 277
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 111, 116, 129, 153
Mph1103I ATGCAT 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 147, 176
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 2 cut(s) 147, 176
MwoI GCNNNNNNNGC 2 cut(s) 171, 236
NdeII GATC 2 cut(s) 91, 241
NlaIII CATG 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 68
PctI GAATGC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 7, 238
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 145, 174
PspGI CCWGG 2 cut(s) 145, 174
PstI CTGCAG 1 cut(s) 238
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SatI GCNGC 2 cut(s) 6, 237
Sau3AI GATC 2 cut(s) 91, 241
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 147, 176
SetI ASST 2 cut(s) 31, 241
SfaNI GCATC 2 cut(s) 53, 217
SfcI CTRYAG 2 cut(s) 160, 234
Sse9I AATT 4 cut(s) 84, 151, 248, 277
SsiI CCGC 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 145, 174
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 90, 94
TasI AATT 4 cut(s) 84, 151, 248, 277
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 5, 236
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 115
XapI RAATTY 3 cut(s) 84, 151, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.