Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

17140951 .. 17144020

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017465

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATTCCGAGCGTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCAGCTCCTCCCACACCAATACCAGATCCAAGAGATCAATCGCCTCACTCTTGCCTACTTCATCGTCTCCGGCGTCGACCTCCTCCATGCTCTCCACTGTGGTGCTGATATTCAACTTGGAATGGCAACTGATAGTATAAAAGAAGCAACTCTCGAATGGCAAGTGAAAACTAAAGTATGTAGTAGTGTAACTAATTCAAATGGTTTTAATACAATCTTGAACTATATGTTGATCGGGGGATACAGGCATAATTGGAACCAGGTGTGGGATGCAATTGCAGTTGATCCTAAATTGCTGGTCTTTTTGAAATCATACAGGAATTTCGTACACATTGAATCTGGTCTTTACAAGAACTTGTTCCCCTTCCTTATTTTCGTCCTCGGTGGTTCTCAAGCTGCTTCTCTGAATTTGGTAGCTGATTATGATTCTTTGAAATGTCCAGCTGATGGAAGCCTTCTCAGTGAGGCAGTGGTGGATTCTGAGAATGCTGTAGCCGCTGTAAATGTAAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

191

Amino Acids

21.22

Weight (kDa)

5.26

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 88	5e-07	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	2 cut(s)	76, 335
AcsI	RAATTY	2 cut(s)	376, 463
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	56, 384, 568
AfiI	CCNNNNNNNGG	2 cut(s)	322, 503
AgsI	TTSAA	6 cut(s)	170, 255, 277, 364, 392, 490
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	61, 452, 473, 500
AluI	AGCT	4 cut(s)	61, 452, 473, 500
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	76, 335
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	376, 463
Asp700I	GAANNNNTTC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	453, 552
BlsI	GCNGC	2 cut(s)	454, 553
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 503
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	54, 331
BseLI	CCNNNNNNNGG	2 cut(s)	322, 503
BseMII	CTCAG	2 cut(s)	528, 529
BseRI	GAGGAG	2 cut(s)	53, 128
BseXI	GCAGC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	322, 503
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	81, 90, 288, 340
BspACI	CCGC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	528, 529
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	76, 335
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	4 cut(s)	81, 90, 288, 340
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	515, 537, 570
BstF5I	GGATG	2 cut(s)	54, 331
BstKTI	GATC	4 cut(s)	84, 93, 291, 343
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	4 cut(s)	81, 90, 288, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	54, 331
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	151, 523, 531
CseI	GACGC	1 cut(s)	118
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	55, 383, 567
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	6 cut(s)	61, 452, 473, 500, 510, 551
CviKI_1	RGCY	6 cut(s)	61, 452, 473, 500, 510, 551
CviQI	GTAC	3 cut(s)	55, 383, 567
DdeI	CTNAG	3 cut(s)	515, 537, 570
DpnI	GATC	4 cut(s)	83, 92, 290, 342
DpnII	GATC	4 cut(s)	81, 90, 288, 340
EcoRII	CCWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	146
FaiI	YATR	8 cut(s)	144, 194, 235, 282, 284, 306, 370, 480
FatI	CATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	453, 552
FokI	GGATG	2 cut(s)	61, 338
Fsp4HI	GCNGC	2 cut(s)	453, 552
GluI	GCNGC	2 cut(s)	453, 552
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	5, 392, 482, 533
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	133, 385
Hpy188I	TCNGA	3 cut(s)	10, 462, 538
Hpy188III	TCNNGA	3 cut(s)	19, 209, 274
Hpy8I	GTNNAC	2 cut(s)	133, 385
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	430, 521
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	329, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	3 cut(s)	515, 537, 570
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	81, 90, 288, 340
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	316
MabI	ACCWGGT	1 cut(s)	315
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	34, 244
MalI	GATC	4 cut(s)	83, 92, 290, 342
MboI	GATC	4 cut(s)	81, 90, 288, 340
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	6 cut(s)	250, 307, 330, 347, 376, 463
MnlI	CCTC	6 cut(s)	74, 110, 146, 149, 446, 514
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	500, 554
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	4 cut(s)	81, 90, 288, 340
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	4 cut(s)	5, 392, 482, 533
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	454, 553
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	56, 384, 568
RsaNI	GTAC	3 cut(s)	55, 383, 567
RseI	CAYNNNNRTG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	453, 552
Sau3AI	GATC	4 cut(s)	81, 90, 288, 340
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	36, 63, 138, 321, 454, 475, 502
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	6 cut(s)	250, 307, 330, 347, 376, 463
SsiI	CCGC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	18, 132, 210
TasI	AATT	6 cut(s)	250, 307, 330, 347, 376, 463
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	4 cut(s)	5, 392, 482, 533
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	158, 523, 531
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	158, 523, 531
Van91I	CCANNNNNTGG	1 cut(s)	503
XapI	RAATTY	2 cut(s)	376, 463
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.