Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

73343215 .. 73345623

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGAGTTTCCATATTTTCGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTCGCACTATAGCAATGGTGGCCTGGAAAGAGACTCCAACAATCCATACCATCGGCAAGCAGTAACTGTGTGGGATGCAACTGCAGCTGGTCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACATTGAATCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

100

Amino Acids

11.37

Weight (kDa)

9.8

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	151, 277
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	265, 293
AhdI	GACNNNNNGTC	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	145, 174
AluBI	AGCT	2 cut(s)	29, 239
AluI	AGCT	2 cut(s)	29, 239
Alw26I	GTCTC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	5, 236
ApoI	RAATTY	2 cut(s)	151, 277
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	147, 176
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	160, 234
BisI	GCNGC	2 cut(s)	6, 237
BlsI	GCNGC	2 cut(s)	7, 238
Bme1390I	CCNGG	2 cut(s)	147, 176
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	147, 176
BmsI	GCATC	2 cut(s)	53, 217
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	147, 176
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	68, 232
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	147, 176
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	68, 232
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	91
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 236
BstNI	CCWGG	2 cut(s)	147, 176
BstSCI	CCNGG	2 cut(s)	145, 174
BstSFI	CTRYAG	2 cut(s)	160, 234
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	68, 232
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	6 cut(s)	5, 29, 126, 139, 174, 239
CviKI_1	RGCY	6 cut(s)	5, 29, 126, 139, 174, 239
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DriI	GACNNNNNGTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	145, 174
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	1 cut(s)	70
FaiI	YATR	4 cut(s)	68, 84, 162, 199
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	6, 237
FokI	GGATG	2 cut(s)	75, 239
Fsp4HI	GCNGC	2 cut(s)	6, 237
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	2 cut(s)	6, 237
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	2 cut(s)	185, 293
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	6 cut(s)	8, 19, 49, 66, 230, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 236
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	54, 96, 132, 159, 161, 188, 225, 239, 259
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	53, 217
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MluCI	AATT	3 cut(s)	151, 248, 277
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	111, 116, 129, 153
Mph1103I	ATGCAT	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	147, 176
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	147, 176
MwoI	GCNNNNNNNGC	2 cut(s)	171, 236
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	68
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	7, 238
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	145, 174
PspGI	CCWGG	2 cut(s)	145, 174
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	218
PvuI	CGATCG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SatI	GCNGC	2 cut(s)	6, 237
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	147, 176
SetI	ASST	3 cut(s)	31, 241, 302
SfaNI	GCATC	2 cut(s)	53, 217
SfcI	CTRYAG	2 cut(s)	160, 234
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	151, 248, 277
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	145, 174
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	90, 94
TasI	AATT	3 cut(s)	151, 248, 277
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	5, 236
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	151, 277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.