Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

50599138 .. 50599548

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTCACCGGAGTTTAACAGAGACTCGGATCTCCATCTCCGACCATGGATTCCGAGCCTTTCAAGAGAGAAAAGAATTTTGACTTTTCTGGGGATAATGTACCAGCTCCTCCCACACCAATACCAGATGCAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTTGACCTCCTCCATGCTCTCCACCACGTGCATCATCCCTCCTCAATACGTTGTCGTTTAAGGAGTTCAATTTTTTCATTCACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

87

Amino Acids

10.33

Weight (kDa)

9.61

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	24 - 69	4.3e-06	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	63, 243
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	15, 172
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	202
BccI	CCATC	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	15, 172
BmsI	GCATC	2 cut(s)	117, 214
BsaAI	YACGTR	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	7
Bse8I	GATNNNNATC	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	33
BseRI	GAGGAG	3 cut(s)	98, 173, 205
BshFI	GGCC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	8, 171
BsmAI	GTCTC	2 cut(s)	15, 172
BsmBI	CGTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	28, 135
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	28, 135
BssT1I	CCWWGG	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	31, 138
BstMAI	GTCTC	2 cut(s)	15, 172
BstMBI	GATC	2 cut(s)	28, 135
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	45, 188
CviJI	RGCY	3 cut(s)	57, 106, 174
CviKI_1	RGCY	3 cut(s)	57, 106, 174
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	2 cut(s)	30, 137
DpnII	GATC	2 cut(s)	28, 135
DraIII	CACNNNGTG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	48, 191
FaiI	YATR	2 cut(s)	46, 189
FatI	CATG	2 cut(s)	44, 187
FokI	GGATG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	8, 171
Hin1II	CATG	2 cut(s)	48, 191
HinfI	GANTC	2 cut(s)	23, 49
HpaII	CCGG	2 cut(s)	8, 171
Hpy188I	TCNGA	3 cut(s)	28, 41, 54
Hpy188III	TCNNGA	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	201, 223
HpyCH4V	TGCA	2 cut(s)	130, 205
HpySE526I	ACGT	2 cut(s)	201, 223
Hsp92II	CATG	2 cut(s)	48, 191
Kzo9I	GATC	2 cut(s)	28, 135
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	21, 74, 116, 137, 184
LweI	GCATC	2 cut(s)	117, 214
MaeII	ACGT	2 cut(s)	201, 223
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	30, 137
MboI	GATC	2 cut(s)	28, 135
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	75, 243, 259
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	119, 155, 191, 194, 223, 226
MseI	TTAA	2 cut(s)	15, 233
MspI	CCGG	2 cut(s)	8, 171
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	28, 135
NlaIII	CATG	2 cut(s)	48, 191
NmuCI	GTSAC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	17
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	202
PspCI	CACGTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	15, 233
Sau3AI	GATC	2 cut(s)	28, 135
SchI	GAGTC	1 cut(s)	17
SetI	ASST	4 cut(s)	108, 183, 204, 226
SfaNI	GCATC	2 cut(s)	117, 214
Sse9I	AATT	3 cut(s)	75, 243, 259
SsiI	CCGC	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	44
TaiI	ACGT	2 cut(s)	204, 226
TasI	AATT	3 cut(s)	75, 243, 259
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	15, 233
Tru9I	TTAA	2 cut(s)	15, 233
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	240
XapI	RAATTY	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.