Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

10676848 .. 10679204

Gene Structure 2357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGATTTTTCAAATTTTCGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACTTCAAGAGGCTTCCTCCAGGGAATTCGCACTATAGCAATGGTGACCTGGAAAGAGAGTCCAACAATCCATACCATCGGCAAGCAGTAACTAGGGGCCATAAAGACTCAAGAATTTGCTGGGATATACTGTGCAATAGTCATAAGTCGGAACGATTAAAGAGAGCCAAATCTGAGAAATCATCACTTCTGGAACAAGCTGAGGAACTTGCAGATCAATTAATTGCTGGTGAAATATCCTCATTTTGTCAAAGTGATGCTTCCATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

132

Amino Acids

15.01

Weight (kDa)

8.41

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	84, 151, 240
AgsI	TTSAA	2 cut(s)	83, 133
AhdI	GACNNNNNGTC	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	145, 174
AluBI	AGCT	2 cut(s)	29, 326
AluI	AGCT	2 cut(s)	29, 326
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	84, 151, 240
AseI	ATTAAT	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	182, 368
BbvCI	CCTCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	210, 398
BciT130I	CCWGG	2 cut(s)	147, 176
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	147, 176
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	147, 176
BmsI	GCATC	2 cut(s)	53, 373
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	147, 176
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	291, 318
BseNI	ACTGG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	91, 340
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	292, 319
BspLI	GGNNCC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	91, 340
Bst2UI	CCWGG	2 cut(s)	147, 176
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	300, 327
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	94, 343
BstMBI	GATC	2 cut(s)	91, 340
BstMCI	CGRYCG	1 cut(s)	94
BstNI	CCWGG	2 cut(s)	147, 176
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	145, 174
BstSFI	CTRYAG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	5, 29, 126, 139, 225, 293, 326
CviKI_1	RGCY	7 cut(s)	5, 29, 126, 139, 225, 293, 326
DdeI	CTNAG	2 cut(s)	300, 327
DpnI	GATC	2 cut(s)	93, 342
DpnII	GATC	2 cut(s)	91, 340
DriI	GACNNNNNGTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	145, 174
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	68, 162, 199, 228, 254, 270
FalI	AAGNNNNNCTT	1 cut(s)	370
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	2 cut(s)	185, 233
HphI	GGTGA	2 cut(s)	182, 368
Hpy188I	TCNGA	3 cut(s)	277, 301, 395
Hpy188III	TCNNGA	3 cut(s)	133, 237, 317
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	6 cut(s)	8, 19, 49, 66, 261, 338
HpyF3I	CTNAG	2 cut(s)	300, 327
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	91, 340
LpnPI	CCDG	9 cut(s)	54, 96, 132, 159, 161, 188, 232, 302, 339
LweI	GCATC	2 cut(s)	53, 373
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	170, 214
MalI	GATC	2 cut(s)	93, 342
MboI	GATC	2 cut(s)	91, 340
MluCI	AATT	5 cut(s)	84, 151, 240, 344, 348
MlyI	GAGTC	2 cut(s)	194, 227
MmeI	TCCRAC	2 cut(s)	213, 255
MnlI	CCTC	6 cut(s)	111, 116, 129, 153, 322, 376
Mph1103I	ATGCAT	1 cut(s)	68
MseI	TTAA	2 cut(s)	284, 347
MspR9I	CCNGG	2 cut(s)	147, 176
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	147, 176
NdeII	GATC	2 cut(s)	91, 340
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	68
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	2 cut(s)	193, 227
PpsI	GAGTC	2 cut(s)	193, 227
PshBI	ATTAAT	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	145, 174
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	145, 174
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	284, 347
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	91, 340
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	194, 227
ScrFI	CCNGG	2 cut(s)	147, 176
SetI	ASST	3 cut(s)	31, 177, 328
SfaNI	GCATC	2 cut(s)	53, 373
SfcI	CTRYAG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	5 cut(s)	84, 151, 240, 344, 348
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	145, 174
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	90, 94
TasI	AATT	5 cut(s)	84, 151, 240, 344, 348
Tru1I	TTAA	2 cut(s)	284, 347
Tru9I	TTAA	2 cut(s)	284, 347
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	347
XapI	RAATTY	3 cut(s)	84, 151, 240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.