Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007193.1

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Reverse (-)

20415 .. 23033

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007193.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgattggacgacagggctggggttggaggcaaggtggtgcagggtggtcagatctagacgcgatgatgcaaattggattatggggtatggcgacgtggtgggacaatagagactgtctggaggggctagtggtggttaggatgaggcgttatcagatgggtgacgctacggtggtgggggatgttgttctgttggggattggccggccatgcttggttgacggcggcggcggtttgggccttagtctgattgtgggctcggcctgggccctgtgttggtgtcttgttggtaataagacactacaaagggtcagaggagatggtgatttggagcagttgaggattaacggtgttgacaatagggtgattcttctccctcctttcacttttctacatcatcatcctcagattcctttgctctccccaaaagaaagcacttttctacttgttttccacacacttcctacctcatcagctctgttcctccaattccaggtttcaatggcgtatttccagaacgatgacctcgagtacgtcgtcaacgactactacggcgacgtcgttgagtttgaggaagacaacgacgcttttgctgataaccagccccggcgaagcctcgaggacgtagactccgactccgactccgactccgactttgaagacgaccttgattcgagcaaggtgaagagtgatacatcggctttggaagctagaaatggaaaggatatacagggaataccatgggagaggcttaatttcacaagagataagtaccgtgaggcgcgattgaagcagtataagaactatgagagcctcggtcggcctcgtcaagacctcgagaaggagtgcttgcaagtggagaaggggaaaagtttctatgactttcactacaacacaaggcttgtcaagtcgacaattgtgcattttcaggtagagatcatgatcttggttcccgtaactgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

321

Amino Acids

36.53

Weight (kDa)

4.83

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	561
AbsI	CCTCGAGG	1 cut(s)	617
AccI	GTMKAC	2 cut(s)	627, 911
AccII	CGCG	2 cut(s)	62, 784
AciI	CCGC	3 cut(s)	225, 228, 231
AcoI	YGGCCR	2 cut(s)	202, 206
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	2 cut(s)	533, 773
AfiI	CCNNNNNNNGG	3 cut(s)	276, 493, 841
AgsI	TTSAA	3 cut(s)	501, 659, 790
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	2 cut(s)	263, 492
AluBI	AGCT	2 cut(s)	476, 710
AluI	AGCT	2 cut(s)	476, 710
Alw26I	GTCTC	1 cut(s)	105
Ama87I	CYCGRG	3 cut(s)	527, 617, 836
AoxI	GGCC	6 cut(s)	202, 206, 238, 261, 267, 821
ApaI	GGGCCC	1 cut(s)	271
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp700I	GAANNNNTTC	1 cut(s)	872
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	3 cut(s)	238, 267, 268
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	4 cut(s)	173, 335, 376, 694
AvaI	CYCGRG	3 cut(s)	527, 617, 836
BaeGI	GKGCMC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	260, 271
BbsI	GAAGAC	2 cut(s)	582, 666
BccI	CCATC	2 cut(s)	151, 314
BceAI	ACGGC	2 cut(s)	238, 568
BcgI	CGANNNNNNTGC	4 cut(s)	572, 606, 901, 935
BciT130I	CCWGG	2 cut(s)	265, 494
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	3 cut(s)	56, 128, 711
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	226, 229
BlsI	GCNGC	2 cut(s)	227, 230
Bme1390I	CCNGG	3 cut(s)	265, 494, 607
BmeT110I	CYCGRG	3 cut(s)	527, 617, 836
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	3 cut(s)	238, 267, 268
BmiI	GGNNCC	2 cut(s)	269, 951
BmrFI	CCNGG	3 cut(s)	265, 494, 607
BmsI	GCATC	1 cut(s)	57
BpiI	GAAGAC	2 cut(s)	582, 666
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	4 cut(s)	264, 605, 740, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 493, 841
Bse118I	RCCGGY	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	2 cut(s)	265, 494
BseDI	CCNNGG	4 cut(s)	264, 605, 740, 814
BseGI	GGATG	3 cut(s)	147, 187, 400
BseJI	GATNNNNATC	1 cut(s)	941
BseLI	CCNNNNNNNGG	3 cut(s)	276, 493, 841
BseMII	CTCAG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	2 cut(s)	62, 784
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	6 cut(s)	204, 208, 240, 263, 269, 823
BsiEI	CGRYCG	1 cut(s)	820
BsiHKCI	CYCGRG	3 cut(s)	527, 617, 836
BsiSI	CCGG	2 cut(s)	205, 607
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	276, 493, 841
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	204, 208, 240, 263, 269, 823
BsoBI	CYCGRG	3 cut(s)	527, 617, 836
Bsp120I	GGGCCC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	260, 271
Bsp143I	GATC	3 cut(s)	52, 936, 942
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	3 cut(s)	225, 228, 231
BspANI	GGCC	6 cut(s)	204, 208, 240, 263, 269, 823
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	62, 784
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	2 cut(s)	269, 951
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	4 cut(s)	264, 605, 740, 814
BssMI	GATC	3 cut(s)	52, 936, 942
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	265, 494
Bst4CI	ACNGT	5 cut(s)	116, 172, 350, 776, 961
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	206, 851
BstDEI	CTNAG	2 cut(s)	242, 405
BstDSI	CCRYGG	1 cut(s)	740
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstF5I	GGATG	3 cut(s)	147, 187, 400
BstFNI	CGCG	2 cut(s)	62, 784
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	3 cut(s)	55, 939, 945
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	3 cut(s)	52, 936, 942
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 237, 707, 790
BstNI	CCWGG	2 cut(s)	265, 494
BstSCI	CCNGG	3 cut(s)	263, 492, 605
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	2 cut(s)	62, 784
BstV2I	GAAGAC	2 cut(s)	582, 666
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	6 cut(s)	204, 208, 240, 263, 269, 823
BtgI	CCRYGG	1 cut(s)	740
BtgZI	GCGATG	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	147, 187, 400
Cac8I	GCNNGC	2 cut(s)	206, 851
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	238, 267, 268
CseI	GACGC	3 cut(s)	68, 173, 593
Csp6I	GTAC	2 cut(s)	532, 772
CviAII	CATG	3 cut(s)	210, 741, 940
CviQI	GTAC	2 cut(s)	532, 772
DdeI	CTNAG	2 cut(s)	242, 405
DpnI	GATC	3 cut(s)	54, 938, 944
DpnII	GATC	3 cut(s)	52, 936, 942
EaeI	YGGCCR	2 cut(s)	202, 206
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	2 cut(s)	260, 271
Eco88I	CYCGRG	3 cut(s)	527, 617, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	263, 492
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	2 cut(s)	260, 271
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	3 cut(s)	213, 744, 943
FaiI	YATR	9 cut(s)	82, 89, 211, 728, 742, 798, 807, 879, 941
FalI	AAGNNNNNCTT	4 cut(s)	651, 683, 833, 865
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	209, 740, 939
FblI	GTMKAC	2 cut(s)	627, 911
Fnu4HI	GCNGC	2 cut(s)	226, 229
FokI	GGATG	3 cut(s)	154, 194, 387
FriOI	GRGCYC	2 cut(s)	260, 271
FseI	GGCCGGCC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	226, 229
FspBI	CTAG	3 cut(s)	56, 128, 711
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	2 cut(s)	226, 229
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	6 cut(s)	204, 208, 240, 263, 269, 823
HapII	CCGG	2 cut(s)	205, 607
HgaI	GACGC	3 cut(s)	68, 173, 593
HhaI	GCGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	3 cut(s)	213, 744, 943
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	4 cut(s)	220, 355, 541, 912
HindII	GTYRAC	4 cut(s)	220, 355, 541, 912
HinfI	GANTC	7 cut(s)	367, 409, 629, 635, 641, 647, 671
HpaII	CCGG	2 cut(s)	205, 607
HphI	GGTGA	4 cut(s)	173, 335, 376, 694
Hpy166II	GTNNAC	5 cut(s)	220, 355, 541, 628, 912
Hpy188I	TCNGA	9 cut(s)	52, 156, 249, 314, 408, 634, 640, 646, 652
Hpy188III	TCNNGA	6 cut(s)	56, 119, 514, 830, 838, 940
Hpy8I	GTNNAC	5 cut(s)	220, 355, 541, 628, 912
Hpy99I	CGWCG	5 cut(s)	97, 539, 560, 563, 587
HpyAV	CCTTC	2 cut(s)	835, 856
HpyCH4III	ACNGT	5 cut(s)	116, 172, 350, 776, 961
HpyCH4IV	ACGT	4 cut(s)	95, 534, 558, 624
HpyCH4V	TGCA	4 cut(s)	41, 70, 853, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 237, 707, 790
HpyF3I	CTNAG	2 cut(s)	242, 405
HpySE526I	ACGT	4 cut(s)	95, 534, 558, 624
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	213, 744, 943
HspAI	GCGC	1 cut(s)	782
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	52, 936, 942
LmnI	GCTCC	1 cut(s)	331
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	3 cut(s)	56, 128, 711
MaeII	ACGT	4 cut(s)	95, 534, 558, 624
MaeIII	GTNAC	2 cut(s)	161, 955
MalI	GATC	3 cut(s)	54, 938, 944
MboI	GATC	3 cut(s)	52, 936, 942
MboII	GAAGA	4 cut(s)	362, 587, 671, 697
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	260, 271
MluCI	AATT	4 cut(s)	72, 488, 754, 915
MlyI	GAGTC	4 cut(s)	623, 629, 635, 641
MmeI	TCCRAC	5 cut(s)	5, 657, 663, 669, 675
MroNI	GCCGGC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	872
MseI	TTAA	2 cut(s)	345, 753
MspI	CCGG	2 cut(s)	205, 607
MspR9I	CCNGG	3 cut(s)	265, 494, 607
MunI	CAATTG	1 cut(s)	915
MvaI	CCWGG	2 cut(s)	265, 494
MvnI	CGCG	2 cut(s)	62, 784
MwoI	GCNNNNNNNGC	4 cut(s)	210, 237, 707, 790
NaeI	GCCGGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	607
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	3 cut(s)	52, 936, 942
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	213, 744, 943
NlaIV	GGNNCC	2 cut(s)	269, 951
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	161
PaeR7I	CTCGAG	3 cut(s)	527, 617, 836
PagI	TCATGA	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	5 cut(s)	525, 534, 540, 558, 630
PdiI	GCCGGC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	872
PfeI	GAWTC	3 cut(s)	367, 409, 671
PkrI	GCNGC	2 cut(s)	227, 230
PleI	GAGTC	4 cut(s)	623, 629, 635, 641
PpsI	GAGTC	4 cut(s)	623, 629, 635, 641
Psp6I	CCWGG	2 cut(s)	263, 492
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	263, 492
PspN4I	GGNNCC	2 cut(s)	269, 951
PspOMI	GGGCCC	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	238, 267, 268
PspXI	VCTCGAGB	2 cut(s)	527, 617
PsuI	RGATCY	1 cut(s)	52
RigI	GGCCGGCC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	533, 773
RsaNI	GTAC	2 cut(s)	532, 772
SalI	GTCGAC	1 cut(s)	910
SaqAI	TTAA	2 cut(s)	345, 753
SatI	GCNGC	2 cut(s)	226, 229
Sau3AI	GATC	3 cut(s)	52, 936, 942
Sau96I	GGNCC	3 cut(s)	238, 267, 268
SchI	GAGTC	4 cut(s)	623, 629, 635, 641
ScrFI	CCNGG	3 cut(s)	265, 494, 607
SduI	GDGCHC	2 cut(s)	260, 271
SfaNI	GCATC	1 cut(s)	57
Sfr274I	CTCGAG	3 cut(s)	527, 617, 836
SlaI	CTCGAG	3 cut(s)	527, 617, 836
SmlI	CTYRAG	3 cut(s)	527, 617, 836
SmoI	CTYRAG	3 cut(s)	527, 617, 836
Sse9I	AATT	4 cut(s)	72, 488, 754, 915
SsiI	CCGC	3 cut(s)	225, 228, 231
SspMI	CTAG	3 cut(s)	56, 128, 711
StyD4I	CCNGG	3 cut(s)	263, 492, 605
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	5 cut(s)	116, 172, 350, 776, 961
TaiI	ACGT	4 cut(s)	98, 537, 561, 627
TaqI	TCGA	5 cut(s)	528, 618, 674, 837, 911
TaqII	GACCGA	1 cut(s)	806
TasI	AATT	4 cut(s)	72, 488, 754, 915
TauI	GCSGC	2 cut(s)	228, 231
TfiI	GAWTC	3 cut(s)	367, 409, 671
Tru1I	TTAA	2 cut(s)	345, 753
Tru9I	TTAA	2 cut(s)	345, 753
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	839
XbaI	TCTAGA	1 cut(s)	55
XhoI	CTCGAG	3 cut(s)	527, 617, 836
XmiI	GTMKAC	2 cut(s)	627, 911
XmnI	GAANNNNTTC	1 cut(s)	872
XspI	CTAG	3 cut(s)	56, 128, 711
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.