Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001770

Physical Location & Seq

Genomic Coordinates Forward (+)

35967933 .. 35970805

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029281

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGATTCAGAGCCTTTCGAGAGAGAAAAGAATGTGACTTTTCTGGGGATGATGTACCAGCTCCTCCCACACCAATACCAGATCCAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTCGACCTCCTCCATGCTCTCCACCGCTCCATGGAAAGCATAGCAATGAACTCATGCCAAAGCTCAAGCTCCTCTTCTGACTCCAGCTCTCTCCGAAGCCTCGACGACTCCAACGACTGGGAAGATGACCTTGATTCGGGTAAACACGGTATCGAGAAACAACCATTTCAGCTCCCTGATTTCATTGCTGCAACTGGTACTGAGAAAATTAGACAGGGGGAATCTGCATTATGGAGACTTGCCTGGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

4.8

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 55	1.9e-07	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131751 RchiOBHm_Chr3g0476491 RchiOBHm_Chr5g0047881 RchiOBHm_Chr5g0067151 RchiOBHm_Chr7g0239741 RchiOBHm_Chr7g0239751 RchiOBHm_Chr7g0239811 RchiOBHm_Chr7g0240001
rosa_laevigata	RLG00000017465 RLG00000029281 RLG00000036286
rosa_multiflora	Rmu_sc0000389.1_g000043 Rmu_sc0000498.1_g000011 Rmu_sc0007193.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059850 Rroxscaffold_2G00120160 Rroxscaffold_3G00230140
rosa_rugosa	Rorug01G0042500 Rorug04G0302000
rosa_samantha	Rh1AG075400 Rh1AG171100 Rh1BG070500 Rh1CG245100 Rh2AG507000 Rh2CG297600 Rh4BG005100 Rh4CG110500 Rh4CG199600 Rh4DG067400 Rh4DG185200 Rh5AG442100 Rh5BG324900 Rh5BG459100 Rh5CG481300 Rh5DG191400 Rh5DG204200 Rh5DG474100 Rh6AG039800 Rh7AG211400 Rh7BG184600 Rh7CG153700 Rh7CG246700 Rh7DG321300
rosa_wichuraiana	Rw1G018320 Rw4G029660 Rw5G041310 Rw7G040450 Rw7G040500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	2 cut(s)	97, 154
AclWI	GGATC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	56, 328
AfiI	CCNNNNNNNGG	3 cut(s)	160, 246, 265
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	5 cut(s)	61, 192, 198, 216, 301
AluI	AGCT	5 cut(s)	61, 192, 198, 216, 301
Alw26I	GTCTC	2 cut(s)	127, 358
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	127, 358
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 246, 265
Bse1I	ACTGG	2 cut(s)	251, 328
Bse3DI	GCAATG	2 cut(s)	180, 312
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	160, 246, 265
BseMI	GCAATG	2 cut(s)	180, 312
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	251, 328
BseRI	GAGGAG	3 cut(s)	53, 128, 190
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	160, 246, 265
BsmAI	GTCTC	2 cut(s)	127, 358
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	81, 90
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	97, 154
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	180, 312
BsrI	ACTGG	2 cut(s)	251, 328
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	81, 90
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	84, 93
BstMAI	GTCTC	2 cut(s)	127, 358
BstMBI	GATC	2 cut(s)	81, 90
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	55, 327
CviAII	CATG	4 cut(s)	143, 160, 183, 381
CviJI	RGCY	8 cut(s)	13, 61, 129, 192, 198, 216, 228, 301
CviKI_1	RGCY	8 cut(s)	13, 61, 129, 192, 198, 216, 228, 301
CviQI	GTAC	2 cut(s)	55, 327
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	83, 92
DpnII	GATC	2 cut(s)	81, 90
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	146, 163, 186, 384
FaiI	YATR	6 cut(s)	144, 161, 170, 184, 361, 382
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 243, 275
FatI	CATG	4 cut(s)	142, 159, 182, 380
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	4 cut(s)	146, 163, 186, 384
HinfI	GANTC	5 cut(s)	5, 209, 236, 263, 350
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	10, 208, 224
Hpy188III	TCNNGA	2 cut(s)	19, 283
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	2 cut(s)	122, 236
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	320, 356
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	146, 163, 186, 384
Kzo9I	GATC	2 cut(s)	81, 90
LmnI	GCTCC	4 cut(s)	66, 161, 203, 306
Lsp1109I	GCAGC	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	83, 92
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	81, 90
MboII	GAAGA	2 cut(s)	195, 263
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	203, 230
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	7 cut(s)	74, 110, 140, 146, 149, 211, 239
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	81, 90
NlaIII	CATG	4 cut(s)	146, 163, 186, 384
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 240
PfeI	GAWTC	3 cut(s)	5, 263, 350
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	2 cut(s)	203, 230
PpsI	GAGTC	2 cut(s)	203, 230
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	56, 328
RsaNI	GTAC	2 cut(s)	55, 327
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	81, 90
SchI	GAGTC	2 cut(s)	203, 230
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	7 cut(s)	63, 138, 194, 200, 218, 261, 303
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	97, 154
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	4 cut(s)	18, 132, 231, 282
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	5, 263, 350
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	191, 301
Van91I	CCANNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.