Rmu_sc0000776.1_g000009

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000776.1
OG0001696
Physical Location & Seq
Forward (+)
42011 .. 42793
783 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
atgaccgttcctaaacctcgtagaagaaaagagtcatatgaaggatctcaatcaggttctcacacatcaaggacatctgaaactccatcgttttctgttgatttaaatgtagatgaagatgagcaagagtacatcaatgatgaagttgcttcacatgatcgtcccatgggaacgaagatggtaaagatgaaaaggaaagccatcgatgagaagaaaaagaattatgataagatcatggccgataaccaagcaataaaagagttacttgaaaaaagtatgctggaaagatcaagttccgctcccaagtttgaccattacacgtcaagcaaattggatattcaatgtcagcgcgaagagaataaaatcatgctgaccaatttgggttccataacaaatccaacagaccgtgaattcttgaagatgaggaaggcagaagttatgcaaagaagagctcgtgagtctcaatcacaaggatcaccacctactacatttggctatggtaactttagtaacctgaaccaatttcaaagtggttctgaagctacttttcattctgaaaattttggtagtcctttacaatttttaagtggattcggaggaagtggtgggagtggaggagtaccacatgctggaggaagtagtgggtttggaacaagtagcggtggaggagtacctgagtacaatgaaagtggtggatttggaacaagcgatggttatggaggaagtgatgctaatctaccggaatacgagctaattttagtttttttatgtgtatttcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

260

Amino Acids

28.52

Weight (kDa)

5.65

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 16 - 145 3.6e-07 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 629
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 1 cut(s) 351
AciI CCGC 2 cut(s) 297, 660
AclWI GGATC 2 cut(s) 52, 481
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 2 cut(s) 410, 559
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 4 cut(s) 131, 621, 672, 680
AfiI CCNNNNNNNGG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 5 cut(s) 269, 341, 418, 527, 779
AjiI CACGTC 1 cut(s) 321
AluBI AGCT 3 cut(s) 452, 542, 751
AluI AGCT 3 cut(s) 452, 542, 751
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 2 cut(s) 52, 481
AoxI GGCC 1 cut(s) 237
ApoI RAATTY 2 cut(s) 410, 559
AspLEI GCGC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 454
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 454
BccI CCATC 4 cut(s) 94, 172, 209, 704
BcoDI GTCTC 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 385
BmsI GCATC 1 cut(s) 718
BpmI CTGGAG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 204
BsaBI GATNNNNATC 2 cut(s) 49, 732
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse8I GATNNNNATC 2 cut(s) 49, 732
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 165
BseJI GATNNNNATC 2 cut(s) 49, 732
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 630, 681
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 1 cut(s) 740
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 5 cut(s) 44, 157, 231, 287, 473
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 2 cut(s) 297, 660
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 667
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 2 cut(s) 52, 481
BspQI GCTCTTC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 5 cut(s) 44, 157, 231, 287, 473
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 7, 407
Bst6I CTCTTC 2 cut(s) 348, 442
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 5 cut(s) 47, 160, 234, 290, 476
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 5 cut(s) 44, 157, 231, 287, 473
BstNSI RCATGY 1 cut(s) 629
BstUI CGCG 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 204
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 723
BtrI CACGTC 1 cut(s) 321
CfoI GCGC 1 cut(s) 351
ClaI ATCGAT 1 cut(s) 204
Csp6I GTAC 4 cut(s) 130, 620, 671, 679
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 5 cut(s) 155, 166, 235, 367, 626
CviJI RGCY 6 cut(s) 200, 239, 452, 495, 542, 751
CviKI_1 RGCY 6 cut(s) 200, 239, 452, 495, 542, 751
CviQI GTAC 4 cut(s) 130, 620, 671, 679
DdeI CTNAG 1 cut(s) 675
DpnI GATC 5 cut(s) 46, 159, 233, 289, 475
DpnII GATC 5 cut(s) 44, 157, 231, 287, 473
DraI TTTAAA 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 348, 442
EarI CTCTTC 2 cut(s) 348, 442
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 5 cut(s) 158, 169, 238, 370, 629
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 147
FatI CATG 5 cut(s) 154, 165, 234, 366, 625
FauNDI CATATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 454
GlaI GCGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 740
HhaI GCGC 1 cut(s) 351
Hin1II CATG 5 cut(s) 158, 169, 238, 370, 629
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 3 cut(s) 32, 458, 591
HpaII CCGG 1 cut(s) 740
HphI GGTGA 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 79, 538, 556, 596
Hpy188III TCNNGA 2 cut(s) 415, 455
HpyAV CCTTC 2 cut(s) 35, 421
HpyCH4III ACNGT 2 cut(s) 7, 407
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 442
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 5 cut(s) 158, 169, 238, 370, 629
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 5 cut(s) 44, 157, 231, 287, 473
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 6 cut(s) 39, 266, 527, 615, 687, 753
LweI GCATC 1 cut(s) 718
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 261, 500, 509
MalI GATC 5 cut(s) 46, 159, 233, 289, 475
MbiI CCGCTC 1 cut(s) 299
MboI GATC 5 cut(s) 44, 157, 231, 287, 473
MboII GAAGA 7 cut(s) 36, 128, 187, 223, 365, 430, 459
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 8 cut(s) 220, 329, 376, 410, 521, 559, 578, 753
MlyI GAGTC 2 cut(s) 41, 467
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 7 cut(s) 27, 417, 590, 608, 626, 659, 713
MseI TTAA 2 cut(s) 104, 584
MspI CCGG 1 cut(s) 740
MvnI CGCG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 37
NdeII GATC 5 cut(s) 44, 157, 231, 287, 473
NlaIII CATG 5 cut(s) 158, 169, 238, 370, 629
NlaIV GGNNCC 1 cut(s) 385
NspI RCATGY 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 591
PflMI CCANNNNNTGG 1 cut(s) 629
PleI GAGTC 2 cut(s) 40, 466
PpsI GAGTC 2 cut(s) 40, 466
Psp124BI GAGCTC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 4 cut(s) 131, 621, 672, 680
RsaNI GTAC 4 cut(s) 130, 620, 671, 679
SacI GAGCTC 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 104, 584
Sau3AI GATC 5 cut(s) 44, 157, 231, 287, 473
SchI GAGTC 2 cut(s) 41, 467
SduI GDGCHC 1 cut(s) 454
SetI ASST 9 cut(s) 19, 58, 323, 454, 484, 516, 544, 676, 753
SfaNI GCATC 1 cut(s) 718
SmiI ATTTAAAT 1 cut(s) 105
Sse9I AATT 8 cut(s) 220, 329, 376, 410, 521, 559, 578, 753
SsiI CCGC 2 cut(s) 297, 660
SstI GAGCTC 1 cut(s) 454
StyI CCWWGG 1 cut(s) 165
SwaI ATTTAAAT 1 cut(s) 105
TaaI ACNGT 2 cut(s) 7, 407
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 204
TasI AATT 8 cut(s) 220, 329, 376, 410, 521, 559, 578, 753
TatI WGTACW 2 cut(s) 129, 678
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 2 cut(s) 104, 584
Tru9I TTAA 2 cut(s) 104, 584
TspDTI ATGAA 6 cut(s) 54, 129, 156, 203, 539, 699
Van91I CCANNNNNTGG 1 cut(s) 629
XapI RAATTY 2 cut(s) 410, 559
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.