Rmu_sc0001576.1_g000004

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
OG0001762
Physical Location & Seq
Forward (+)
7401 .. 12983
5583 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1644 bp
atgaaaagaaaaacaacggagacgactgatcacggtttagcctgtagtcctcctccgcctcttttgtacgtcatagacgatatgcacatggataaatcagattgtgagggaccaaacgccgacgaccactgtgagagtgtttttcccatccccgatgaaatcccagattctaaattggaggaattttttctgcgaatgaaatcgaactatgaaccttgctatagagccacattggataaggctgcgcgaaccatcacattctctcaacaaccactcaagttgatgcctggtcctgctttgaacaaatatggcgtgcttgaactcaacactttctttgtgtacttccccgaaaaccgagcaacaaagttggaagccgcatggcctgaggttgaattaaccttagatgcctactccctttcatgcgatctgaatctggccaagtgttgcatgcaagtctcaacaaccccatcgcttgaggatccatgtatgattgaaaaggctaggcatctccttgaactgttgtccacaactcttgttccgccatatatggcgttagaaattttccaagaagttaggcaacaggaaaccatcaacataggatttcagcagggtgggatttgctcaaaatttgggatcaagaaggtagatgttgggcagactcttatcatttacgttttctttggagcattctctgtagtagtgatgctgggccttttaatttgcgctgaaaacacttttactgctgtgactgctgtgggtagctcagttgaaagaatttctcagctgaaggctgttgtggaagactgtataaccaagaatctgtgtccttcgacctctattaggaggtttgaaacggaagttgtaatgtatcaatcgatggatgatcttgatgatccacatgccaagcacacggaatgcttgaagtctggccctttgtcggacaaagatggaatgcttgaagtctgctcgctatatgcattactccatgaaagacaagaaggtgtgaaaagtattgaggacccacatgtacagcacatggatataggaaattctgggtcagcgatgatggtcatgcctgaactctcctctttctgtatgttctttgatggagaacaagcaactcggttggaaaaagattggaagtgtgtggaagcgtgcttaaagaagcatggcatttcttgcaaactgattgctgcggtcgagtgttacatgatagtctccaaaacaacaaatgctggggatccagatatcactgacaagatttgggatttccttaaacttctgtcaattgatgttgagccttctaaggcaatagaagtactgaatggccgtctgcattttgacttcatcccgacagggtatagatatggtggtgggctctgttcagaatttaggatcactgaggagcaatttgctgaagtggtgtggccacgtattgagcgcggcttagagccaaacgttattactgtcttgggacctggagaactaggggtgttcagaaggtttgtggaacagtgttttcgtttcagacctcgtccgacttgtgtcatgcgggctaaaataaaaggcaggttcgtgccaccttttggtcgtgaggctcgtgcatttttctttggcgaggatgtggccatgcttgaggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

547

Amino Acids

61.51

Weight (kDa)

5.09

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 110 - 187 9.3e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1560
AccB7I CCANNNNNTGG 1 cut(s) 1586
AccII CGCG 2 cut(s) 247, 1443
AciI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
AclI AACGTT 1 cut(s) 1458
AclWI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
AcoI YGGCCR 4 cut(s) 435, 1327, 1427, 1626
AcsI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
AcuI CTGAAG 2 cut(s) 806, 1437
AfaI GTAC 4 cut(s) 68, 341, 1029, 1320
AfiI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
AflIII ACRYGT 1 cut(s) 1024
AgsI TTSAA 9 cut(s) 301, 320, 392, 494, 515, 770, 851, 922, 959
AjnI CCWGG 2 cut(s) 286, 1477
AluBI AGCT 2 cut(s) 762, 784
AluI AGCT 2 cut(s) 762, 784
Alw26I GTCTC 3 cut(s) 14, 460, 1222
AlwI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
AoxI GGCC 8 cut(s) 380, 435, 709, 928, 1327, 1427, 1626, 1638
ApeKI GCWGC 2 cut(s) 242, 1193
ApoI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 3 cut(s) 247, 725, 1443
AspS9I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
AvaII GGWCC 4 cut(s) 110, 290, 1018, 1475
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 3 cut(s) 437, 1429, 1628
BamHI GGATCC 2 cut(s) 478, 1240
BanII GRGCYC 1 cut(s) 1380
BauI CACGAG 1 cut(s) 1599
BbsI GAAGAC 1 cut(s) 807
BbvI GCAGC 2 cut(s) 229, 1180
BccI CCATC 8 cut(s) 155, 260, 475, 596, 871, 941, 1060, 1100
BceAI ACGGC 1 cut(s) 1314
BciT130I CCWGG 2 cut(s) 288, 1479
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 14, 460, 1222
BfaI CTAG 3 cut(s) 501, 1487, 1642
BfmI CTRYAG 3 cut(s) 43, 220, 693
BfuAI ACCTGC 1 cut(s) 1560
BisI GCNGC 4 cut(s) 243, 375, 1194, 1444
BlsI GCNGC 4 cut(s) 244, 376, 1195, 1445
BmcAI AGTACT 1 cut(s) 1320
Bme1390I CCNGG 2 cut(s) 288, 1479
Bme18I GGWCC 4 cut(s) 110, 290, 1018, 1475
BmgT120I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
BmiI GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
BmrFI CCNGG 2 cut(s) 288, 1479
BmsI GCATC 4 cut(s) 273, 394, 514, 693
BoxI GACNNNNGTC 1 cut(s) 1544
BpiI GAAGAC 1 cut(s) 807
BpmI CTGGAG 1 cut(s) 1500
BpuEI CTTGAG 2 cut(s) 260, 494
Bsa29I ATCGAT 1 cut(s) 875
BsaAI YACGTR 1 cut(s) 1433
BsaBI GATNNNNATC 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 840, 937, 1586
Bse21I CCTNAGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 2 cut(s) 288, 1479
BseCI ATCGAT 1 cut(s) 875
BseGI GGATG 4 cut(s) 147, 886, 1347, 1627
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
BseMII CTCAG 4 cut(s) 375, 777, 794, 1392
BseRI GAGGAG 3 cut(s) 42, 1075, 1418
BseXI GCAGC 2 cut(s) 229, 1180
BseYI CCCAGC 2 cut(s) 706, 1235
Bsh1236I CGCG 2 cut(s) 247, 1443
Bsh1285I CGRYCG 1 cut(s) 1200
BshFI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BshVI ATCGAT 1 cut(s) 875
BsiEI CGRYCG 1 cut(s) 1200
BslFI GGGAC 2 cut(s) 123, 1488
BslI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
BsmAI GTCTC 3 cut(s) 14, 460, 1222
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 123, 1488
BsmI GAATGC 3 cut(s) 686, 920, 957
BsnI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
Bsp1286I GDGCHC 1 cut(s) 1380
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BspACI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
BspANI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BspCNI CTCAG 4 cut(s) 376, 776, 793, 1393
BspDI ATCGAT 1 cut(s) 875
BspFNI CGCG 2 cut(s) 247, 1443
BspLI GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
BspMI ACCTGC 1 cut(s) 1560
BspPI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
BsrGI TGTACA 1 cut(s) 1027
BssMI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BssSI CACGAG 1 cut(s) 1599
Bst2BI CACGAG 1 cut(s) 1599
Bst2UI CCWGG 2 cut(s) 288, 1479
Bst4CI ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
BstAPI GCANNNNNTGC 1 cut(s) 1179
BstAUI TGTACA 1 cut(s) 1027
BstBAI YACGTR 1 cut(s) 1433
BstC8I GCNNGC 5 cut(s) 314, 449, 968, 1156, 1554
BstDEI CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
BstENI CCTNNNNNAGG 1 cut(s) 838
BstF5I GGATG 4 cut(s) 147, 886, 1347, 1627
BstFNI CGCG 2 cut(s) 247, 1443
BstHHI GCGC 3 cut(s) 247, 725, 1443
BstKTI GATC 8 cut(s) 31, 427, 481, 636, 886, 895, 1243, 1398
BstMAI GTCTC 3 cut(s) 14, 460, 1222
BstMBI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BstMCI CGRYCG 1 cut(s) 1200
BstMWI GCNNNNNNNGC 2 cut(s) 749, 1179
BstNI CCWGG 2 cut(s) 288, 1479
BstNSI RCATGY 3 cut(s) 451, 902, 1028
BstPAI GACNNNNGTC 1 cut(s) 1544
BstSCI CCNGG 2 cut(s) 286, 1477
BstSFI CTRYAG 3 cut(s) 43, 220, 693
BstUI CGCG 2 cut(s) 247, 1443
BstV1I GCAGC 2 cut(s) 229, 1180
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 478, 1240
BstYI RGATCY 2 cut(s) 478, 1240
Bsu15I ATCGAT 1 cut(s) 875
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BsuTUI ATCGAT 1 cut(s) 875
BtgZI GCGATG 2 cut(s) 453, 1076
BtsCI GGATG 4 cut(s) 147, 886, 1347, 1627
BtsIMutI CAGTG 4 cut(s) 127, 1251, 1398, 1520
BveI ACCTGC 1 cut(s) 1560
Cac8I GCNNGC 5 cut(s) 314, 449, 968, 1156, 1554
CfoI GCGC 3 cut(s) 247, 725, 1443
Cfr13I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
ClaI ATCGAT 1 cut(s) 875
Csp6I GTAC 4 cut(s) 67, 340, 1028, 1319
CspCI CAANNNNNGTGG 4 cut(s) 261, 296, 514, 549
CviQI GTAC 4 cut(s) 67, 340, 1028, 1319
DdeI CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
DpnI GATC 8 cut(s) 30, 426, 480, 635, 885, 894, 1242, 1397
DpnII GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
EaeI YGGCCR 4 cut(s) 435, 1327, 1427, 1626
EciI GGCGGA 2 cut(s) 45, 528
Eco147I AGGCCT 1 cut(s) 1640
Eco24I GRGCYC 1 cut(s) 1380
Eco32I GATATC 1 cut(s) 1249
Eco47I GGWCC 4 cut(s) 110, 290, 1018, 1475
Eco57I CTGAAG 2 cut(s) 806, 1437
Eco81I CCTNAGG 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 838
EcoO109I RGGNCCY 2 cut(s) 1018, 1475
EcoRII CCWGG 2 cut(s) 286, 1477
EcoRV GATATC 1 cut(s) 1249
EcoT22I ATGCAT 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 1380
Esp3I CGTCTC 1 cut(s) 14
FaqI GGGAC 2 cut(s) 123, 1488
FauI CCCGC 1 cut(s) 1545
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 243, 375, 1194, 1444
FokI GGATG 4 cut(s) 134, 893, 1334, 1634
FriOI GRGCYC 1 cut(s) 1380
Fsp4HI GCNGC 4 cut(s) 243, 375, 1194, 1444
FspBI CTAG 3 cut(s) 501, 1487, 1642
GlaI GCGC 3 cut(s) 246, 724, 1442
GluI GCNGC 4 cut(s) 243, 375, 1194, 1444
GsaI CCCAGC 2 cut(s) 710, 1239
GsuI CTGGAG 1 cut(s) 1500
HaeIII GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
HhaI GCGC 3 cut(s) 247, 725, 1443
Hin6I GCGC 3 cut(s) 245, 723, 1441
HinP1I GCGC 3 cut(s) 245, 723, 1441
HinfI GANTC 4 cut(s) 167, 430, 658, 817
Hpy166II GTNNAC 2 cut(s) 340, 525
Hpy188I TCNGA 7 cut(s) 100, 429, 940, 1387, 1499, 1529, 1539
Hpy188III TCNNGA 5 cut(s) 637, 887, 1244, 1351, 1592
Hpy8I GTNNAC 2 cut(s) 340, 525
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 6 cut(s) 634, 781, 837, 992, 1311, 1494
HpyCH4III ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
HpyCH4IV ACGT 4 cut(s) 69, 672, 1432, 1458
HpyCH4V TGCA 7 cut(s) 85, 447, 451, 977, 1182, 1336, 1604
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 1179
HpyF3I CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
HpySE526I ACGT 4 cut(s) 69, 672, 1432, 1458
HspAI GCGC 3 cut(s) 245, 723, 1441
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
LmnI GCTCC 2 cut(s) 683, 1405
Lsp1109I GCAGC 2 cut(s) 229, 1180
LweI GCATC 4 cut(s) 273, 394, 514, 693
MaeI CTAG 3 cut(s) 501, 1487, 1642
MaeII ACGT 4 cut(s) 69, 672, 1432, 1458
MaeIII GTNAC 2 cut(s) 745, 1205
MalI GATC 8 cut(s) 30, 426, 480, 635, 885, 894, 1242, 1397
MboI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
MboII GAAGA 1 cut(s) 812
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 2 cut(s) 478, 1240
MhlI GDGCHC 1 cut(s) 1380
MlsI TGGCCA 3 cut(s) 437, 1429, 1628
MluNI TGGCCA 3 cut(s) 437, 1429, 1628
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 4 cut(s) 348, 918, 1107, 1562
Mox20I TGGCCA 3 cut(s) 437, 1429, 1628
Mph1103I ATGCAT 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 3 cut(s) 437, 1429, 1628
MseI TTAA 4 cut(s) 395, 716, 1160, 1275
Msp20I TGGCCA 3 cut(s) 437, 1429, 1628
MspA1I CMGCKG 1 cut(s) 784
MspR9I CCNGG 2 cut(s) 288, 1479
MunI CAATTG 1 cut(s) 1287
Mva1269I GAATGC 3 cut(s) 686, 920, 957
MvaI CCWGG 2 cut(s) 288, 1479
MvnI CGCG 2 cut(s) 247, 1443
MwoI GCNNNNNNNGC 2 cut(s) 749, 1179
NdeII GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
NlaIV GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
NmuCI GTSAC 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 979
NspI RCATGY 3 cut(s) 451, 902, 1028
PaeI GCATGC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 1640
PciI ACATGT 1 cut(s) 1024
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 1597
PctI GAATGC 3 cut(s) 686, 920, 957
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 167, 430, 817
PflFI GACNNNGTC 1 cut(s) 1533
PflMI CCANNNNNTGG 1 cut(s) 1586
PkrI GCNGC 4 cut(s) 244, 376, 1195, 1445
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Ppu21I YACGTR 1 cut(s) 1433
PpuMI RGGWCCY 2 cut(s) 1018, 1475
PscI ACATGT 1 cut(s) 1024
PshAI GACNNNNGTC 1 cut(s) 1544
Psp1406I AACGTT 1 cut(s) 1458
Psp5II RGGWCCY 2 cut(s) 1018, 1475
Psp6I CCWGG 2 cut(s) 286, 1477
PspFI CCCAGC 2 cut(s) 706, 1235
PspGI CCWGG 2 cut(s) 286, 1477
PspN4I GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
PspPI GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
PspPPI RGGWCCY 2 cut(s) 1018, 1475
PsuI RGATCY 2 cut(s) 478, 1240
PsyI GACNNNGTC 1 cut(s) 1533
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 4 cut(s) 68, 341, 1029, 1320
RsaNI GTAC 4 cut(s) 67, 340, 1028, 1319
SaqAI TTAA 4 cut(s) 395, 716, 1160, 1275
SatI GCNGC 4 cut(s) 243, 375, 1194, 1444
Sau3AI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
Sau96I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
ScaI AGTACT 1 cut(s) 1320
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 288, 1479
SduI GDGCHC 1 cut(s) 1380
SfaNI GCATC 4 cut(s) 273, 394, 514, 693
SfcI CTRYAG 3 cut(s) 43, 220, 693
SinI GGWCC 4 cut(s) 110, 290, 1018, 1475
SmlI CTYRAG 3 cut(s) 275, 473, 1634
SmoI CTYRAG 3 cut(s) 275, 473, 1634
SphI GCATGC 1 cut(s) 451
SseBI AGGCCT 1 cut(s) 1640
SsiI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
SspMI CTAG 3 cut(s) 501, 1487, 1642
StuI AGGCCT 1 cut(s) 1640
StyD4I CCNGG 2 cut(s) 286, 1477
TaaI ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
TaiI ACGT 4 cut(s) 72, 675, 1435, 1461
TaqI TCGA 4 cut(s) 203, 830, 875, 1200
TatI WGTACW 3 cut(s) 339, 1027, 1318
TauI GCSGC 2 cut(s) 377, 1446
TfiI GAWTC 3 cut(s) 167, 430, 817
Tru1I TTAA 4 cut(s) 395, 716, 1160, 1275
Tru9I TTAA 4 cut(s) 395, 716, 1160, 1275
TscAI CASTG 4 cut(s) 134, 1258, 1405, 1520
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 2 cut(s) 242, 1193
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 7 cut(s) 17, 171, 212, 225, 408, 1002, 1336
TspGWI ACGGA 3 cut(s) 32, 869, 926
TspRI CASTG 4 cut(s) 134, 1258, 1405, 1520
Tth111I GACNNNGTC 1 cut(s) 1533
Van91I CCANNNNNTGG 1 cut(s) 1586
VpaK11BI GGWCC 4 cut(s) 110, 290, 1018, 1475
XagI CCTNNNNNAGG 1 cut(s) 838
XapI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
XceI RCATGY 3 cut(s) 451, 902, 1028
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 3 cut(s) 501, 1487, 1642
ZrmI AGTACT 1 cut(s) 1320
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.