Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001872.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

41691 .. 42422

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgaccgctcctaaacctcgtagaaggaaggagtcatctgaaggatctcaatcaggttctcgcacatcaaggacatctgatactccatcgttttctgttgatttaaatgcagatgaagatgagcaagagtacatcaacgatgaagttgcttcacatgatcgtcccatgggaacgaggatggcaaagatgaaaaggaaagccaccgatgagaagaaaaagaattatgataagatcatggccgataaccaagcaataaaagagttacttgaaaaaagtatgctggagagatcaagcttcgcttccaagtttgaccattacacgtcaagcaaattggatattcaacgtcagcgcgaagagaataaaatcatgctgaccaatttggattccataacagatccaacagaccgtgaattcttgaagatgaggaaggcagaagttatgcaaagaagagctcgtgagtctcaatcacaaggatcaccacctactacatttggctatggtaactttagtaaccttaaccagtttcaaagtggttctgaagctacatttcattctggaaattttggtagtcctttacaattttcaagtggattcggaggaagtggtgggagtggaggagtaccacatgctggaggaagtagcggtggaggagtgcctgagtacaatgaaagtggtggattcggaacaagcgatggttatggaggaagtgatgctaatctaccggaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

243

Amino Acids

26.58

Weight (kDa)

6.01

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	9 - 145	1.4e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	6, 642
AclWI	GGATC	3 cut(s)	52, 389, 481
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	410, 559
AcuI	CTGAAG	2 cut(s)	60, 558
AfaI	GTAC	3 cut(s)	131, 621, 662
AfiI	CCNNNNNNNGG	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	269, 341, 418, 527, 585
AjiI	CACGTC	1 cut(s)	321
AluBI	AGCT	3 cut(s)	294, 452, 542
AluI	AGCT	3 cut(s)	294, 452, 542
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	52, 389, 481
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	410, 559
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	454
BccI	CCATC	3 cut(s)	94, 172, 686
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	730
BmgBI	CACGTC	1 cut(s)	321
BmsI	GCATC	1 cut(s)	700
BpmI	CTGGAG	2 cut(s)	302, 651
BsaBI	GATNNNNATC	2 cut(s)	49, 714
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	520
Bse8I	GATNNNNATC	2 cut(s)	49, 714
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	2 cut(s)	49, 714
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	2 cut(s)	630, 663
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	6, 642
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	351
BspPI	GGATC	3 cut(s)	52, 389, 481
BspQI	GCTCTTC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	348, 442
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	6 cut(s)	47, 160, 234, 290, 397, 476
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
BstNSI	RCATGY	1 cut(s)	629
BstUI	CGCG	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	44, 394
BstYI	RGATCY	2 cut(s)	44, 394
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	130, 620, 661
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviAII	CATG	5 cut(s)	155, 166, 235, 367, 626
CviJI	RGCY	6 cut(s)	200, 239, 294, 452, 495, 542
CviKI_1	RGCY	6 cut(s)	200, 239, 294, 452, 495, 542
CviQI	GTAC	3 cut(s)	130, 620, 661
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	6 cut(s)	46, 159, 233, 289, 396, 475
DpnII	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	348, 442
EarI	CTCTTC	2 cut(s)	348, 442
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	60, 558
EcoICRI	GAGCTC	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	158, 169, 238, 370, 629
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 283, 315
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	5 cut(s)	154, 165, 234, 366, 625
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	454
FspBI	CTAG	1 cut(s)	730
GlaI	GCGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	302, 651
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	158, 169, 238, 370, 629
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	5 cut(s)	32, 383, 458, 591, 678
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	468
Hpy188I	TCNGA	5 cut(s)	40, 79, 538, 596, 683
Hpy188III	TCNNGA	3 cut(s)	415, 455, 555
HpyAV	CCTTC	4 cut(s)	18, 22, 35, 421
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	320, 343
HpyCH4V	TGCA	2 cut(s)	110, 442
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	2 cut(s)	320, 343
Hsp92II	CATG	5 cut(s)	158, 169, 238, 370, 629
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
LguI	GCTCTTC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	39, 266, 533, 540, 615, 669
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	2 cut(s)	320, 343
MaeIII	GTNAC	3 cut(s)	261, 500, 509
MalI	GATC	6 cut(s)	46, 159, 233, 289, 396, 475
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
MboII	GAAGA	5 cut(s)	128, 223, 365, 430, 459
MflI	RGATCY	2 cut(s)	44, 394
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	6 cut(s)	220, 329, 376, 410, 559, 578
MlyI	GAGTC	2 cut(s)	41, 467
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	8 cut(s)	27, 168, 417, 590, 608, 626, 641, 695
MseI	TTAA	2 cut(s)	104, 516
MspI	CCGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
NlaIII	CATG	5 cut(s)	158, 169, 238, 370, 629
NspI	RCATGY	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	383, 591, 678
PflMI	CCANNNNNTGG	1 cut(s)	629
PleI	GAGTC	2 cut(s)	40, 466
PpsI	GAGTC	2 cut(s)	40, 466
Psp124BI	GAGCTC	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	44, 394
RsaI	GTAC	3 cut(s)	131, 621, 662
RsaNI	GTAC	3 cut(s)	130, 620, 661
SacI	GAGCTC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	104, 516
Sau3AI	GATC	6 cut(s)	44, 157, 231, 287, 394, 473
SchI	GAGTC	2 cut(s)	41, 467
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	9 cut(s)	19, 58, 296, 323, 346, 454, 484, 516, 544
SfaNI	GCATC	1 cut(s)	700
SmiI	ATTTAAAT	1 cut(s)	105
Sse9I	AATT	6 cut(s)	220, 329, 376, 410, 559, 578
SsiI	CCGC	2 cut(s)	6, 642
SspMI	CTAG	1 cut(s)	730
SstI	GAGCTC	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	165
SwaI	ATTTAAAT	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	323, 346
TasI	AATT	6 cut(s)	220, 329, 376, 410, 559, 578
TatI	WGTACW	2 cut(s)	129, 660
TfiI	GAWTC	3 cut(s)	383, 591, 678
Tru1I	TTAA	2 cut(s)	104, 516
Tru9I	TTAA	2 cut(s)	104, 516
TspDTI	ATGAA	5 cut(s)	129, 156, 203, 539, 681
Van91I	CCANNNNNTGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	410, 559
XceI	RCATGY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.