Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003527.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

10205 .. 13876

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

atggtgaagtcgtacttgcgatacgagcagggtgccgccttcggcgtgatagtttctggcaattcaaacatcgcctacgacagttccgggaagcacatttttgccccgggcctggaaaaggtgggcgtgtggaacgtgcgacaaggcatttgcatcaaaaccttaactccttgtgctgatggatattcgccgccagtcacctccatcgcagtctcgccttcttcttcttcttcttctctgattgccgctgggtatggagatgggagcattagaatttgggactctcagaataaaatttgtgagaccacattctacggtcatacgggggccgttagtgtcttacggtacaacaagattggagataggctggtttctggtggccaagataaggacattatattgtgggatgtggagaggggcgagggcatctatcgccttcgcgggcatgggaatcaggtcactgatctcgtcttcttggactgttgtaagaaactcgttagttcctcaaaagacaaatttttgaaggtctgggatctcgaaaccccccattgcatgcagacaataagtgaccaccatagtgaaatttggtccatagatatcgatcccgaagaaagatatttggtctctggctctgctgacttggaacttagggtttacacaattaagcatgaccttaaagcttgccaatccgcttctaatggaacagaaattgcagactctggagatccatcccttcataataaatggcaagattctaagcgcctgctagtgtcaaatgtaagaatgaaggagatggatactgatgttcgtgtggtttctatcagtcctgatgccaaatatcttttggtggcgttggataccatagtaaaggtattctatatggattcactcaaacttttcgtcaccttatatggtcacaagctgccagttctatgtctcgatgtctcatccgatggagagttgatagtgactggatctcaagacaaaaatgtgaagatttgggggctagattttggtgactgccacaaatcaatgtttgatcatcagagcagcgttcagcaagtacaatttgtgccaaatacccattactttgttagtgttggggatgataagcaagtaaactactgggatgctgataaatttgagttgcttttaactatgaagggacaccatgagggtgtttgttgcctcgctattagtaaccgtggtgatttctttgtcacgggatctcatgatcgctcaattcgccgctgggatcgtactgatgagccatttttccttgaggaagagagggaaaaacgggagttggaaaagatgtacgagtctgacttcaaggatgaatatgagaacaattttgcactcaaggaaaagatccctgcagagggagctgtggcttttgctgggaagaaaaccaaagaaacaatttctttgaccgactcaattgttgctaaactagaaatagcatgggaagaatcaaagcgacgagccaattatgaggcggaaaaagtcagtggaaagctggttgctgagtttcaaccaaatccttttatgctagggctgtctcctcctgattattttctgcatgaacttttgaaggttaagacaagcgatttggagtcgatgctattggtaagactttacctcatgttgatcaaaatgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

554

Amino Acids

62.44

Weight (kDa)

5.59

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	23 - 221	1.8e-26	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	25 - 104	3.6e-07	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	29 - 334	1.1e-28	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	32 - 221	2.2e-67	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	32 - 138	6.8e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 213	8.9e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	41 - 177	1.5e-11	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	41 - 182	4.1e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	62 - 178	1.9e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	65 - 283	2.7e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	66 - 138	8.8e-06	WD repeat-containing protein 75 first beta-propeller
WDR55	PF24796	66 - 234	3.8e-15	WDR55
WD40_MABP1-WDR62_2nd	PF24782	78 - 179	1.9e-08	MABP1/WDR62 second WD40 domain
Beta-prop_IFT140_1st	PF23383	79 - 138	2.5e-06	IFT140 first beta-propeller
Beta-prop_SCAP	PF24017	81 - 181	2.8e-11	SCAP Beta-propeller
EIF3I	PF24805	105 - 189	1.7e-10	EIF3I
WD40_Gbeta	PF25391	106 - 225	9.4e-13	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	107 - 369	2.7e-33	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	108 - 189	1.4e-08	WDHD1 first WD40 domain
Beta-prop_Aladin	PF25460	110 - 245	3e-06	Aladin seven-bladed propeller
Beta-prop_WDR41	PF25178	118 - 225	2e-09	WDR41
WD40_Prp19	PF24814	119 - 228	7.8e-20	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	122 - 222	5.5e-08	TEP-1 second beta-propeller
WD40	PF00400	143 - 178	9.2e-06	WD domain, G-beta repeat
EIF3I	PF24805	146 - 224	2.6e-08	EIF3I
WD40_WDHD1_1st	PF24817	152 - 225	2.4e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	174 - 424	2.3e-88	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	233 - 421	1.3e-23	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	260 - 340	1.7e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	260 - 419	3.5e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	261 - 419	2.5e-28	WDR3 first beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	263 - 370	1.5e-06	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	265 - 425	4.8e-18	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	266 - 421	4.2e-31	WDR5 beta-propeller domain
WD40_Prp19	PF24814	269 - 422	3.8e-21	Prp19 WD40 domain
Beta-prop_IFT122_1st	PF23381	270 - 369	2.1e-07	IFT122 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	271 - 338	1.9e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	273 - 422	6.7e-15	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	278 - 419	7.8e-12	G protein beta WD-40 repeat protein
EIF3I	PF24805	283 - 365	4.8e-09	EIF3I
WD40	PF00400	300 - 334	5.2e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	301 - 379	2.3e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	305 - 402	2.7e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	306 - 419	1.9e-08	WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	310 - 418	1e-09	MABP1/WDR62 first WD40 domain
WDR55	PF24796	345 - 426	9.2e-06	WDR55
EIF3I	PF24805	347 - 420	1.1e-06	EIF3I
WD40	PF00400	382 - 419	6.9e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	441
AciI	CCGC	7 cut(s)	36, 191, 246, 441, 690, 1249, 1499
AclWI	GGATC	7 cut(s)	540, 596, 719, 982, 1234, 1263, 1366
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	5 cut(s)	273, 294, 515, 582, 1139
AfaI	GTAC	5 cut(s)	14, 347, 1065, 1261, 1319
AfiI	CCNNNNNNNGG	5 cut(s)	112, 118, 388, 1381, 1382
AgsI	TTSAA	5 cut(s)	66, 523, 1333, 1535, 1594
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	576
AluBI	AGCT	4 cut(s)	680, 922, 1388, 1519
AluI	AGCT	4 cut(s)	680, 922, 1388, 1519
Alw26I	GTCTC	6 cut(s)	217, 296, 628, 941, 949, 1566
AlwI	GGATC	7 cut(s)	540, 596, 719, 982, 1234, 1263, 1366
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	3 cut(s)	109, 327, 379
ApeKI	GCWGC	2 cut(s)	922, 1050
ApoI	RAATTY	5 cut(s)	273, 294, 515, 582, 1139
ArsI	GACNNNNNNTTYG	6 cut(s)	132, 164, 885, 917, 1594, 1626
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	3 cut(s)	109, 327, 588
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	5 cut(s)	16, 190, 895, 1028, 1220
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	588
BaeI	ACNNNNGTAYC	4 cut(s)	789, 822, 849, 882
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	909, 1062
BccI	CCATC	6 cut(s)	173, 212, 254, 736, 787, 947
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	113
BciVI	GTATCC	2 cut(s)	790, 850
BclI	TGATCA	2 cut(s)	1039, 1650
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	6 cut(s)	217, 296, 628, 941, 949, 1566
BfaI	CTAG	4 cut(s)	767, 1007, 1454, 1553
BfmI	CTRYAG	1 cut(s)	1377
BfoI	RGCGCY	1 cut(s)	763
BfuI	GTATCC	2 cut(s)	790, 850
BisI	GCNGC	6 cut(s)	36, 191, 246, 923, 1051, 1249
BlsI	GCNGC	6 cut(s)	37, 192, 247, 924, 1052, 1250
Bme1390I	CCNGG	4 cut(s)	88, 107, 108, 113
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 327, 588
BmiI	GGNNCC	2 cut(s)	34, 328
BmrFI	CCNGG	4 cut(s)	88, 107, 108, 113
BmrI	ACTGGG	1 cut(s)	1135
BmsI	GCATC	5 cut(s)	162, 435, 820, 1120, 1611
BmuI	ACTGGG	1 cut(s)	1135
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	741
BpuEI	CTTGAG	3 cut(s)	963, 1301, 1346
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	296, 628
BsaJI	CCNNGG	3 cut(s)	105, 106, 1204
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 118, 388, 1381, 1382
Bse1I	ACTGG	4 cut(s)	194, 926, 976, 1130
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	105, 106, 1204
BseGI	GGATG	6 cut(s)	412, 728, 947, 1111, 1135, 1342
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	5 cut(s)	112, 118, 388, 1381, 1382
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	299, 1518
BseNI	ACTGG	4 cut(s)	194, 926, 976, 1130
BseRI	GAGGAG	1 cut(s)	1554
BseXI	GCAGC	2 cut(s)	909, 1062
BseYI	CCCAGC	3 cut(s)	248, 1251, 1400
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	111, 329, 381
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	87, 107
BslFI	GGGAC	2 cut(s)	293, 1179
BslI	CCNNNNNNNGG	5 cut(s)	112, 118, 388, 1381, 1382
BsmAI	GTCTC	6 cut(s)	217, 296, 628, 941, 949, 1566
BsmFI	GGGAC	2 cut(s)	293, 1179
BsnI	GGCC	3 cut(s)	111, 329, 381
Bso31I	GGTCTC	2 cut(s)	296, 628
BsoBI	CYCGRG	1 cut(s)	106
BspACI	CCGC	7 cut(s)	36, 191, 246, 441, 690, 1249, 1499
BspANI	GGCC	3 cut(s)	111, 329, 381
BspCNI	CTCAG	2 cut(s)	298, 1519
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	2 cut(s)	34, 328
BspMAI	CTGCAG	1 cut(s)	1381
BspPI	GGATC	7 cut(s)	540, 596, 719, 982, 1234, 1263, 1366
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	2 cut(s)	296, 628
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	4 cut(s)	194, 926, 976, 1130
BssECI	CCNNGG	3 cut(s)	105, 106, 1204
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	5 cut(s)	83, 317, 345, 482, 1205
Bst6I	CTCTTC	1 cut(s)	1281
BstC8I	GCNNGC	4 cut(s)	443, 554, 682, 764
BstDEI	CTNAG	4 cut(s)	285, 647, 756, 1527
BstDSI	CCRYGG	1 cut(s)	1204
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	6 cut(s)	412, 728, 947, 1111, 1135, 1342
BstFNI	CGCG	1 cut(s)	441
BstH2I	RGCGCY	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	762
BstMAI	GTCTC	6 cut(s)	217, 296, 628, 941, 949, 1566
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 432, 1245, 1385
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	4 cut(s)	86, 105, 106, 111
BstSFI	CTRYAG	1 cut(s)	1377
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	909, 1062
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	5 cut(s)	532, 724, 974, 1226, 1371
BstYI	RGATCY	5 cut(s)	532, 724, 974, 1226, 1371
Bsu15I	ATCGAT	1 cut(s)	600
BsuI	GTATCC	2 cut(s)	790, 850
BsuRI	GGCC	3 cut(s)	111, 329, 381
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	1204
BtgZI	GCGATG	2 cut(s)	55, 190
BtsCI	GGATG	6 cut(s)	412, 728, 947, 1111, 1135, 1342
BtsIMutI	CAGTG	2 cut(s)	459, 1516
Cac8I	GCNNGC	4 cut(s)	443, 554, 682, 764
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	1 cut(s)	762
Cfr13I	GGNCC	3 cut(s)	109, 327, 588
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	5 cut(s)	13, 346, 1064, 1260, 1318
CviAII	CATG	8 cut(s)	446, 553, 668, 1172, 1232, 1464, 1583, 1645
CviQI	GTAC	5 cut(s)	13, 346, 1064, 1260, 1318
DdeI	CTNAG	4 cut(s)	285, 647, 756, 1527
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	1281
EarI	CTCTTC	1 cut(s)	1281
EciI	GGCGGA	1 cut(s)	1514
Eco31I	GGTCTC	2 cut(s)	296, 628
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	598
FaeI	CATG	8 cut(s)	449, 556, 671, 1175, 1235, 1467, 1586, 1648
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	293, 1179
FatI	CATG	8 cut(s)	445, 552, 667, 1171, 1231, 1463, 1582, 1644
FauI	CCCGC	1 cut(s)	434
FbaI	TGATCA	2 cut(s)	1039, 1650
Fnu4HI	GCNGC	6 cut(s)	36, 191, 246, 923, 1051, 1249
FokI	GGATG	6 cut(s)	419, 715, 934, 1118, 1142, 1349
Fsp4HI	GCNGC	6 cut(s)	36, 191, 246, 923, 1051, 1249
FspBI	CTAG	4 cut(s)	767, 1007, 1454, 1553
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	6 cut(s)	36, 191, 246, 923, 1051, 1249
GsaI	CCCAGC	3 cut(s)	252, 1255, 1404
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	763
HaeIII	GGCC	3 cut(s)	111, 329, 381
HapII	CCGG	2 cut(s)	87, 107
HhaI	GCGC	1 cut(s)	762
Hin1II	CATG	8 cut(s)	449, 556, 671, 1175, 1235, 1467, 1586, 1648
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	9 cut(s)	281, 451, 716, 752, 884, 1322, 1436, 1472, 1616
HpaII	CCGG	2 cut(s)	87, 107
HphI	GGTGA	5 cut(s)	16, 190, 895, 1028, 1220
Hpy166II	GTNNAC	2 cut(s)	655, 1120
Hpy188I	TCNGA	5 cut(s)	240, 288, 952, 1047, 1327
Hpy188III	TCNNGA	8 cut(s)	536, 605, 720, 827, 938, 980, 1232, 1568
Hpy8I	GTNNAC	2 cut(s)	655, 1120
Hpy99I	CGWCG	1 cut(s)	1485
HpyAV	CCTTC	8 cut(s)	49, 228, 446, 517, 743, 781, 1156, 1588
HpyCH4III	ACNGT	5 cut(s)	83, 317, 345, 482, 1205
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	8 cut(s)	153, 552, 556, 713, 1358, 1379, 1582, 1660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 432, 1245, 1385
HpyF3I	CTNAG	4 cut(s)	285, 647, 756, 1527
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	8 cut(s)	449, 556, 671, 1175, 1235, 1467, 1586, 1648
HspAI	GCGC	1 cut(s)	760
Ksp22I	TGATCA	2 cut(s)	1039, 1650
LmnI	GCTCC	2 cut(s)	264, 1385
Lsp1109I	GCAGC	2 cut(s)	909, 1062
LweI	GCATC	5 cut(s)	162, 435, 820, 1120, 1611
MaeI	CTAG	4 cut(s)	767, 1007, 1454, 1553
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	9 cut(s)	196, 457, 566, 901, 914, 967, 1016, 1199, 1219
MfeI	CAATTG	1 cut(s)	1440
MflI	RGATCY	5 cut(s)	532, 724, 974, 1226, 1371
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	5 cut(s)	275, 710, 1331, 1430, 1625
MmeI	TCCRAC	2 cut(s)	834, 1287
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	5 cut(s)	164, 663, 675, 1154, 1599
MslI	CAYNNNNRTG	2 cut(s)	576, 1176
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	2 cut(s)	248, 1251
MspI	CCGG	2 cut(s)	87, 107
MspR9I	CCNGG	4 cut(s)	88, 107, 108, 113
MunI	CAATTG	1 cut(s)	1440
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	25, 432, 1245, 1385
NciI	CCSGG	3 cut(s)	88, 107, 108
NlaIII	CATG	8 cut(s)	449, 556, 671, 1175, 1235, 1467, 1586, 1648
NlaIV	GGNNCC	2 cut(s)	34, 328
NmuCI	GTSAC	8 cut(s)	196, 457, 566, 901, 914, 967, 1016, 1219
NspI	RCATGY	1 cut(s)	556
OliI	CACNNNNGTG	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	1231
PfeI	GAWTC	4 cut(s)	451, 752, 884, 1472
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	6 cut(s)	37, 192, 247, 924, 1052, 1250
PleI	GAGTC	5 cut(s)	275, 710, 1330, 1430, 1624
PpsI	GAGTC	5 cut(s)	275, 710, 1330, 1430, 1624
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	3 cut(s)	248, 1251, 1400
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	34, 328
PspPI	GGNCC	3 cut(s)	109, 327, 588
PstI	CTGCAG	1 cut(s)	1381
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	5 cut(s)	532, 724, 974, 1226, 1371
RsaI	GTAC	5 cut(s)	14, 347, 1065, 1261, 1319
RsaNI	GTAC	5 cut(s)	13, 346, 1064, 1260, 1318
RseI	CAYNNNNRTG	2 cut(s)	576, 1176
SaqAI	TTAA	5 cut(s)	164, 663, 675, 1154, 1599
SatI	GCNGC	6 cut(s)	36, 191, 246, 923, 1051, 1249
Sau96I	GGNCC	3 cut(s)	109, 327, 588
SchI	GAGTC	5 cut(s)	275, 710, 1331, 1430, 1625
ScrFI	CCNGG	4 cut(s)	88, 107, 108, 113
SfaNI	GCATC	5 cut(s)	162, 435, 820, 1120, 1611
SfcI	CTRYAG	1 cut(s)	1377
SinI	GGWCC	1 cut(s)	588
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	576, 1176
SmlI	CTYRAG	3 cut(s)	978, 1280, 1361
SmoI	CTYRAG	3 cut(s)	978, 1280, 1361
SphI	GCATGC	1 cut(s)	556
SsiI	CCGC	7 cut(s)	36, 191, 246, 441, 690, 1249, 1499
SspMI	CTAG	4 cut(s)	767, 1007, 1454, 1553
StyD4I	CCNGG	4 cut(s)	86, 105, 106, 111
TaaI	ACNGT	5 cut(s)	83, 317, 345, 482, 1205
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	4 cut(s)	537, 600, 939, 1619
TaqII	GACCGA	1 cut(s)	1448
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	4 cut(s)	38, 193, 248, 1251
TfiI	GAWTC	4 cut(s)	451, 752, 884, 1472
Tru1I	TTAA	5 cut(s)	164, 663, 675, 1154, 1599
Tru9I	TTAA	5 cut(s)	164, 663, 675, 1154, 1599
TscAI	CASTG	2 cut(s)	466, 1516
TseFI	GTSAC	8 cut(s)	196, 457, 566, 901, 914, 967, 1016, 1219
TseI	GCWGC	2 cut(s)	922, 1050
Tsp45I	GTSAC	8 cut(s)	196, 457, 566, 901, 914, 967, 1016, 1219
TspDTI	ATGAA	5 cut(s)	725, 800, 1175, 1353, 1599
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	2 cut(s)	466, 1516
VpaK11BI	GGWCC	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	5 cut(s)	273, 294, 515, 582, 1139
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmaI	CCCGGG	1 cut(s)	106
XspI	CTAG	4 cut(s)	767, 1007, 1454, 1553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.