Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003767.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

13044 .. 14075

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgaaggcaagtctgaggaaaggagtaaatctggtgggtcgcttcaaagtcaattttctaatctatgctaccgagaaattgcttgataatgctgccatgaccgttcctaaacctcgtagaagaaaagagtcatatgaaggatctcaatcaggttctcgcacatcaaggacatctgatactccatcgttttctgttgatttaaatgtagatgaagatgagcaagagtacatcaacgatgaagttgcttcacatgatcgtcccatgggaacgaagatggcaaagatgaaatggaaagccaccgatgagaagaaaaagaattatgataagatcatggccgataacaaagcaataaaagagttacttgaaaaaattatgctggagagatcaagcttcgcttccaagtttgaccattacacgtcaagcaacttggatattcaacgtcagcacgaagagaataaaatcatgctgactaatttgaattccataatagatccaacaaaccatgaattcttgaagaagaggaaggcagaagttatgcaaagaagagcttatgagtctcaatcacaaggatcaccacctactacatttggctatggtaactttagtaacctgaaccagtttcaaagtggttctgaagctacatttcgttctggaaattttggtagtcctttacaattttcaagtggattcggaggaagtggtgggagtggagaagtaccacatgctggaggaagtagtgggtttggaacaagtagcggtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

254

Amino Acids

28.2

Weight (kDa)

9.2

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	42 - 177	1.2e-07	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	3 cut(s)	148, 485, 577
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	478, 506, 655
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	227, 717
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	7 cut(s)	46, 365, 437, 478, 514, 623, 681
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	3 cut(s)	390, 548, 638
AluI	AGCT	3 cut(s)	390, 548, 638
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	3 cut(s)	148, 485, 577
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	478, 506, 655
AsuHPI	GGTGA	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	190, 268
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcoDI	GTCTC	1 cut(s)	561
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	417
BpmI	CTGGAG	2 cut(s)	398, 747
BsaBI	GATNNNNATC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	6
BspPI	GGATC	3 cut(s)	148, 485, 577
BspQI	GCTCTTC	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	3 cut(s)	444, 512, 538
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	6 cut(s)	143, 256, 330, 386, 493, 572
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
BstNSI	RCATGY	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	140, 490
BstYI	RGATCY	2 cut(s)	140, 490
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	226, 716
CviAII	CATG	7 cut(s)	97, 251, 262, 331, 463, 503, 722
CviJI	RGCY	6 cut(s)	296, 335, 390, 548, 591, 638
CviKI_1	RGCY	6 cut(s)	296, 335, 390, 548, 591, 638
CviQI	GTAC	2 cut(s)	226, 716
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	6 cut(s)	142, 255, 329, 385, 492, 571
DpnII	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	444, 512, 538
EarI	CTCTTC	3 cut(s)	444, 512, 538
Eco130I	CCWWGG	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	2 cut(s)	478, 506
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	7 cut(s)	100, 254, 265, 334, 466, 506, 725
FalI	AAGNNNNNCTT	6 cut(s)	345, 377, 379, 411, 532, 564
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	7 cut(s)	96, 250, 261, 330, 462, 502, 721
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	2 cut(s)	398, 747
HaeIII	GGCC	1 cut(s)	335
Hin1II	CATG	7 cut(s)	100, 254, 265, 334, 466, 506, 725
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	3 cut(s)	128, 554, 687
HphI	GGTGA	1 cut(s)	564
Hpy188I	TCNGA	4 cut(s)	15, 175, 634, 692
Hpy188III	TCNNGA	2 cut(s)	511, 651
HpyAV	CCTTC	2 cut(s)	131, 517
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	416, 439
HpyCH4V	TGCA	1 cut(s)	538
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	2 cut(s)	416, 439
Hsp92II	CATG	7 cut(s)	100, 254, 265, 334, 466, 506, 725
Kzo9I	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
LguI	GCTCTTC	1 cut(s)	538
LpnPI	CCDG	7 cut(s)	17, 135, 362, 623, 629, 636, 711
Lsp1109I	GCAGC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	416, 439
MaeIII	GTNAC	3 cut(s)	357, 596, 605
MalI	GATC	6 cut(s)	142, 255, 329, 385, 492, 571
MboI	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
MboII	GAAGA	8 cut(s)	132, 224, 283, 319, 461, 526, 529, 555
MflI	RGATCY	2 cut(s)	140, 490
MluCI	AATT	9 cut(s)	52, 77, 316, 369, 472, 478, 506, 655, 674
MlyI	GAGTC	2 cut(s)	137, 563
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	9, 123, 513, 686, 722
MseI	TTAA	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
NlaIII	CATG	7 cut(s)	100, 254, 265, 334, 466, 506, 725
NspI	RCATGY	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	687
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	136, 562
PpsI	GAGTC	2 cut(s)	136, 562
PsuI	RGATCY	2 cut(s)	140, 490
RsaI	GTAC	2 cut(s)	227, 717
RsaNI	GTAC	2 cut(s)	226, 716
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	6 cut(s)	140, 253, 327, 383, 490, 569
SchI	GAGTC	2 cut(s)	137, 563
SetI	ASST	9 cut(s)	115, 154, 392, 419, 442, 550, 580, 612, 640
SmiI	ATTTAAAT	1 cut(s)	201
Sse9I	AATT	9 cut(s)	52, 77, 316, 369, 472, 478, 506, 655, 674
SsiI	CCGC	1 cut(s)	756
StyI	CCWWGG	1 cut(s)	261
SwaI	ATTTAAAT	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	419, 442
TasI	AATT	9 cut(s)	52, 77, 316, 369, 472, 478, 506, 655, 674
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	6 cut(s)	17, 150, 225, 252, 299, 519
Van91I	CCANNNNNTGG	1 cut(s)	725
XapI	RAATTY	3 cut(s)	478, 506, 655
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.