Rmu_sc0006410.1_g000019

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006410.1
OG0001696
Physical Location & Seq
Reverse (-)
104762 .. 106004
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
atgtcttcttctaggcgtggattgaattttaccgtagaagaagatctacaattgtgccatgtttatcttgatatttctcaatgtccaattaatggtattaaccacaaaaaggatgcactatgggagaggattgctgctatctacaatgaaggcaagtctgaggaaagtagtcgatctggtgggtcgcttcaaagtcaattttctgatctatgcttaccggtcagtaaacttcgtggtcatattcgacaaattgagtaccaaaatccaagtggtgcatcagagtcctatattaaaaagtttcaatttgaccatgtgtggcccattctaaaaaatgctgagaaatggcttgataatgctgccatgaccgctcctaaacctcgtagaaggaaggagtcatctgaaggatctcaatcaggttctcgcacatcaaggatatctgatactccatcgttttctgttgatttaaatgcagatgaagatgagaaagagtacatcaacaatgaagttgcttcacatgatcgtcccatgggaacaaggatggcaaagatgaaaaggaaagccaccgatgagaagaaaaagaattatgataagatcatggccgataaccaagcaataaaagagttacttgaaaaaagtatgctggacagatcaagcttcgcttccaagtttgaccattacacgtcaagcaaattggatattcaacgtcagcgcgaagagaataaaatcatgctgaccaatttggattccataatagatccaacagaccgtgaattctggaagatgaggaaggcagaagttatgcaaagaagagctcgtgagtctcaatcacaaggatcaccacctactacatttggctatggtaactttagtaaccttaaccagtttcaaagtggttctgaagctatatttcattctggaaattttggtagtcctttacaattttcaagtggattcggaggaagtggtgggagtggaggagtaccacatgctggaggaagtagcgggggaggagtgcctgagtacaatgaaagtggtggattcggaacaagcgatggttatggaggaagtgatgctaatctaccggaacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

363

Amino Acids

40.33

Weight (kDa)

6.53

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 98 - 265 8.6e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 92, 989
AccBSI CCGCTC 1 cut(s) 368
AccII CGCG 1 cut(s) 711
AciI CCGC 2 cut(s) 366, 1002
AclWI GGATC 3 cut(s) 412, 749, 841
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 3 cut(s) 25, 770, 919
AcuI CTGAAG 2 cut(s) 420, 918
AfaI GTAC 4 cut(s) 257, 491, 981, 1022
AfiI CCNNNNNNNGG 3 cut(s) 92, 109, 989
AflIII ACRYGT 1 cut(s) 678
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 7 cut(s) 25, 191, 302, 629, 701, 887, 945
AjiI CACGTC 1 cut(s) 681
AluBI AGCT 3 cut(s) 654, 812, 902
AluI AGCT 3 cut(s) 654, 812, 902
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 1 cut(s) 825
AlwI GGATC 3 cut(s) 412, 749, 841
AoxI GGCC 2 cut(s) 317, 597
ApeKI GCWGC 2 cut(s) 134, 356
ApoI RAATTY 3 cut(s) 25, 770, 919
AseI ATTAAT 1 cut(s) 90
AsiGI ACCGGT 1 cut(s) 217
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 828
BanII GRGCYC 1 cut(s) 814
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 814
BbvI GCAGC 2 cut(s) 121, 343
BccI CCATC 3 cut(s) 454, 532, 1046
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 2 cut(s) 12, 1090
BglII AGATCT 1 cut(s) 43
BisI GCNGC 2 cut(s) 135, 357
BlsI GCNGC 2 cut(s) 136, 358
BmgBI CACGTC 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 318
BmsI GCATC 3 cut(s) 103, 284, 1060
BpmI CTGGAG 1 cut(s) 1011
BsaBI GATNNNNATC 2 cut(s) 409, 1074
BsaJI CCNNGG 1 cut(s) 525
BsaWI WCCGGW 2 cut(s) 217, 1081
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 109, 989
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 880
Bse8I GATNNNNATC 2 cut(s) 409, 1074
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 2 cut(s) 118, 543
BseJI GATNNNNATC 2 cut(s) 409, 1074
BseLI CCNNNNNNNGG 3 cut(s) 92, 109, 989
BseMII CTCAG 3 cut(s) 150, 327, 1008
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 2 cut(s) 990, 1023
BseXI GCAGC 2 cut(s) 121, 343
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 2 cut(s) 319, 599
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 814
BsiSI CCGG 2 cut(s) 218, 1082
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 92, 109, 989
BsmAI GTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 2 cut(s) 319, 599
Bsp1286I GDGCHC 1 cut(s) 814
Bsp143I GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 2 cut(s) 366, 1002
BspANI GGCC 2 cut(s) 319, 599
BspCNI CTCAG 3 cut(s) 151, 328, 1009
BspFNI CGCG 1 cut(s) 711
BspPI GGATC 3 cut(s) 412, 749, 841
BspQI GCTCTTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
BssSI CACGAG 1 cut(s) 813
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 813
Bst4CI ACNGT 2 cut(s) 34, 767
Bst6I CTCTTC 2 cut(s) 708, 802
BstDEI CTNAG 3 cut(s) 159, 336, 1017
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 118, 543
BstFNI CGCG 1 cut(s) 711
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 9 cut(s) 46, 176, 208, 407, 520, 594, 650, 757, 836
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 989
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 2 cut(s) 121, 343
BstX2I RGATCY 3 cut(s) 43, 404, 754
BstYI RGATCY 3 cut(s) 43, 404, 754
BsuRI GGCC 2 cut(s) 319, 599
BtgI CCRYGG 1 cut(s) 525
BtgZI GCGATG 1 cut(s) 1065
BtrI CACGTC 1 cut(s) 681
BtsCI GGATG 2 cut(s) 118, 543
CfoI GCGC 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 4 cut(s) 256, 490, 980, 1021
CspAI ACCGGT 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 8 cut(s) 59, 311, 361, 515, 526, 595, 727, 986
CviJI RGCY 8 cut(s) 319, 346, 560, 599, 654, 812, 855, 902
CviKI_1 RGCY 8 cut(s) 319, 346, 560, 599, 654, 812, 855, 902
CviQI GTAC 4 cut(s) 256, 490, 980, 1021
DdeI CTNAG 3 cut(s) 159, 336, 1017
DpnI GATC 9 cut(s) 45, 175, 207, 406, 519, 593, 649, 756, 835
DpnII GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
DraI TTTAAA 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 708, 802
EarI CTCTTC 2 cut(s) 708, 802
Ecl136II GAGCTC 1 cut(s) 812
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 814
Eco32I GATATC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 812
Eco57I CTGAAG 2 cut(s) 420, 918
EcoICRI GAGCTC 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 770
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 8 cut(s) 62, 314, 364, 518, 529, 598, 730, 989
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 643, 675
FaqI GGGAC 1 cut(s) 507
FatI CATG 8 cut(s) 58, 310, 360, 514, 525, 594, 726, 985
FauI CCCGC 1 cut(s) 995
Fnu4HI GCNGC 2 cut(s) 135, 357
FokI GGATG 2 cut(s) 125, 550
FriOI GRGCYC 1 cut(s) 814
Fsp4HI GCNGC 2 cut(s) 135, 357
FspBI CTAG 2 cut(s) 12, 1090
GlaI GCGC 1 cut(s) 710
GluI GCNGC 2 cut(s) 135, 357
GsuI CTGGAG 1 cut(s) 1011
HaeIII GGCC 2 cut(s) 319, 599
HapII CCGG 2 cut(s) 218, 1082
HhaI GCGC 1 cut(s) 711
Hin1II CATG 8 cut(s) 62, 314, 364, 518, 529, 598, 730, 989
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 6 cut(s) 281, 392, 743, 818, 951, 1038
HpaII CCGG 2 cut(s) 218, 1082
HphI GGTGA 1 cut(s) 828
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 8 cut(s) 160, 205, 280, 400, 439, 898, 956, 1043
Hpy188III TCNNGA 4 cut(s) 68, 775, 815, 915
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 143, 378, 382, 395, 781
HpyCH4III ACNGT 2 cut(s) 34, 767
HpyCH4IV ACGT 2 cut(s) 680, 703
HpyCH4V TGCA 4 cut(s) 116, 275, 470, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 3 cut(s) 159, 336, 1017
HpySE526I ACGT 2 cut(s) 680, 703
Hsp92II CATG 8 cut(s) 62, 314, 364, 518, 529, 598, 730, 989
HspAI GCGC 1 cut(s) 709
Kzo9I GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
LguI GCTCTTC 1 cut(s) 802
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 9 cut(s) 162, 231, 399, 626, 760, 893, 900, 975, 1029
Lsp1109I GCAGC 2 cut(s) 121, 343
LweI GCATC 3 cut(s) 103, 284, 1060
MaeI CTAG 2 cut(s) 12, 1090
MaeII ACGT 2 cut(s) 680, 703
MaeIII GTNAC 3 cut(s) 621, 860, 869
MalI GATC 9 cut(s) 45, 175, 207, 406, 519, 593, 649, 756, 835
MbiI CCGCTC 1 cut(s) 368
MboI GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
MboII GAAGA 7 cut(s) 50, 53, 488, 583, 725, 790, 819
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 3 cut(s) 43, 404, 754
MhlI GDGCHC 1 cut(s) 814
MlyI GAGTC 3 cut(s) 290, 401, 827
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 9 cut(s) 120, 154, 387, 777, 950, 968, 986, 1001, 1055
MseI TTAA 5 cut(s) 90, 99, 291, 464, 876
MspI CCGG 2 cut(s) 218, 1082
MunI CAATTG 1 cut(s) 50
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 365
NcoI CCATGG 1 cut(s) 525
NdeII GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
NlaIII CATG 8 cut(s) 62, 314, 364, 518, 529, 598, 730, 989
NspI RCATGY 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PfeI GAWTC 3 cut(s) 743, 951, 1038
PflMI CCANNNNNTGG 2 cut(s) 92, 989
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 2 cut(s) 136, 358
PleI GAGTC 3 cut(s) 289, 400, 826
PpsI GAGTC 3 cut(s) 289, 400, 826
PshBI ATTAAT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 814
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 3 cut(s) 43, 404, 754
RsaI GTAC 4 cut(s) 257, 491, 981, 1022
RsaNI GTAC 4 cut(s) 256, 490, 980, 1021
SacI GAGCTC 1 cut(s) 814
SapI GCTCTTC 1 cut(s) 802
SaqAI TTAA 5 cut(s) 90, 99, 291, 464, 876
SatI GCNGC 2 cut(s) 135, 357
Sau3AI GATC 9 cut(s) 43, 173, 205, 404, 517, 591, 647, 754, 833
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 3 cut(s) 290, 401, 827
SduI GDGCHC 1 cut(s) 814
SetI ASST 9 cut(s) 379, 418, 656, 683, 706, 814, 844, 876, 904
SfaNI GCATC 3 cut(s) 103, 284, 1060
SmiI ATTTAAAT 1 cut(s) 465
SsiI CCGC 2 cut(s) 366, 1002
SspMI CTAG 2 cut(s) 12, 1090
SstI GAGCTC 1 cut(s) 814
StyI CCWWGG 1 cut(s) 525
SwaI ATTTAAAT 1 cut(s) 465
TaaI ACNGT 2 cut(s) 34, 767
TaiI ACGT 2 cut(s) 683, 706
TaqI TCGA 2 cut(s) 172, 244
TatI WGTACW 2 cut(s) 489, 1020
TfiI GAWTC 3 cut(s) 743, 951, 1038
Tru1I TTAA 5 cut(s) 90, 99, 291, 464, 876
Tru9I TTAA 5 cut(s) 90, 99, 291, 464, 876
TseI GCWGC 2 cut(s) 134, 356
TspDTI ATGAA 6 cut(s) 162, 489, 516, 563, 899, 1041
Van91I CCANNNNNTGG 2 cut(s) 92, 989
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 3 cut(s) 25, 770, 919
XceI RCATGY 1 cut(s) 989
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 887
XspI CTAG 2 cut(s) 12, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.