AT1G06340

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000631
Physical Location & Seq
Reverse (-)
1933284 .. 1934103
820 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06340.1

Sequence Viewer

Length: 405 bp
ATGGAGTTCGTGAAAGGAGATCAAGTTGAAGTCTGCAGCAAAGAAGACGGTTTCTTAGGGTCTTACTTCGGTGCCACGGTTGTATCAAAGACTCCCGAGGGATCTTACTACAAGATTAAGTACAAGAATCTTGTGTCGGACACGGATCAATCTAAACGGTTAGTCGAAGTCATCTCAGCCGACGAACTACGTCCGATGCCTCCCAAATCTCTCCACGTATTGATTCGCTGCGGAGATAAGGTCGATGCTTTCGACAAAGACGGGTGGTGGGTCGGAGAGGTCACCGCTGTGAGAAGAAACATCTACTCTGTTTACTTTTCGACGACCGACGAGGAGCTCGAGTACCCGCTTTACTCTCTGAGAAAGCATCACGAATGGGTTAACGGATCCTGGGTCAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

5.62

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 6 - 68 9.7e-19 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 3 cut(s) 231, 285, 347
AclWI GGATC 4 cut(s) 109, 153, 381, 394
AfaI GTAC 2 cut(s) 122, 344
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 4 cut(s) 109, 153, 381, 394
Ama87I CYCGRG 2 cut(s) 95, 338
ApeKI GCWGC 2 cut(s) 36, 228
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 2 cut(s) 95, 338
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BamHI GGATCC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 48, 215
BciT130I CCWGG 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 2 cut(s) 37, 229
BlsI GCNGC 2 cut(s) 38, 230
Bme1390I CCNGG 1 cut(s) 391
BmeT110I CYCGRG 2 cut(s) 95, 338
BmiI GGNNCC 2 cut(s) 73, 388
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 186, 235, 376
BpiI GAAGAC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 75, 96, 390
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 225, 255, 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 3 cut(s) 75, 96, 390
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 189, 350
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 48, 215
Bsh1285I CGRYCG 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 95, 338
BslI CCNNNNNNNGG 1 cut(s) 396
BsoBI CYCGRG 2 cut(s) 95, 338
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 4 cut(s) 19, 101, 145, 386
BspACI CCGC 3 cut(s) 231, 285, 347
BspCNI CTCAG 2 cut(s) 188, 351
BspLI GGNNCC 2 cut(s) 73, 388
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 4 cut(s) 109, 153, 381, 394
BspT107I GGYRCC 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 75, 96, 390
BssMI GATC 4 cut(s) 19, 101, 145, 386
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 3 cut(s) 50, 79, 159
BstBAI YACGTR 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 55, 175, 359
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 394
BstKTI GATC 4 cut(s) 22, 104, 148, 389
BstMBI GATC 4 cut(s) 19, 101, 145, 386
BstMCI CGRYCG 1 cut(s) 327
BstNI CCWGG 1 cut(s) 391
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 48, 215
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 101, 386
BstYI RGATCY 2 cut(s) 101, 386
BtgI CCRYGG 1 cut(s) 75
Csp6I GTAC 2 cut(s) 121, 343
CviJI RGCY 2 cut(s) 179, 337
CviKI_1 RGCY 2 cut(s) 179, 337
CviQI GTAC 2 cut(s) 121, 343
DdeI CTNAG 3 cut(s) 55, 175, 359
DpnI GATC 4 cut(s) 21, 103, 147, 388
DpnII GATC 4 cut(s) 19, 101, 145, 386
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 95, 338
Eco91I GGTNACC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 339
FauI CCCGC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 37, 229
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 37, 229
GluI GCNGC 2 cut(s) 37, 229
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 3 cut(s) 91, 127, 223
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 313, 382
Hpy188I TCNGA 4 cut(s) 139, 195, 275, 360
Hpy188III TCNNGA 3 cut(s) 10, 95, 371
Hpy8I GTNNAC 2 cut(s) 313, 382
Hpy99I CGWCG 3 cut(s) 185, 325, 332
HpyCH4III ACNGT 3 cut(s) 50, 79, 159
HpyCH4IV ACGT 2 cut(s) 190, 216
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 55, 175, 359
HpySE526I ACGT 2 cut(s) 190, 216
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 19, 101, 145, 386
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 2 cut(s) 376, 382
Lsp1109I GCAGC 2 cut(s) 48, 215
LweI GCATC 3 cut(s) 186, 235, 376
MaeII ACGT 2 cut(s) 190, 216
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 21, 103, 147, 388
MboI GATC 4 cut(s) 19, 101, 145, 386
MboII GAAGA 2 cut(s) 56, 306
MflI RGATCY 2 cut(s) 101, 386
MhlI GDGCHC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 117, 253
MnlI CCTC 4 cut(s) 91, 210, 271, 325
MseI TTAA 2 cut(s) 117, 381
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 391
NdeII GATC 4 cut(s) 19, 101, 145, 386
NlaIV GGNNCC 2 cut(s) 73, 388
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 336
PfeI GAWTC 2 cut(s) 127, 223
PkrI GCNGC 2 cut(s) 38, 230
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 73, 388
PspXI VCTCGAGB 1 cut(s) 338
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 101, 386
RsaI GTAC 2 cut(s) 122, 344
RsaNI GTAC 2 cut(s) 121, 343
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 117, 381
SatI GCNGC 2 cut(s) 37, 229
Sau3AI GATC 4 cut(s) 19, 101, 145, 386
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 1 cut(s) 339
SetI ASST 5 cut(s) 193, 219, 243, 282, 339
SfaNI GCATC 3 cut(s) 186, 235, 376
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SsiI CCGC 3 cut(s) 231, 285, 347
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 3 cut(s) 50, 79, 159
TaiI ACGT 2 cut(s) 193, 219
TaqI TCGA 5 cut(s) 165, 243, 252, 320, 339
TaqII GACCGA 1 cut(s) 341
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 127, 223
Tru1I TTAA 2 cut(s) 117, 381
Tru9I TTAA 2 cut(s) 117, 381
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 36, 228
Tsp45I GTSAC 1 cut(s) 280
TspGWI ACGGA 2 cut(s) 158, 399
XagI CCTNNNNNAGG 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.