FvH4_6g14470

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000631
Physical Location & Seq
Forward (+)
8910570 .. 8911343
774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14470.t1

Sequence Viewer

Length: 456 bp
ATGGCACTCTCATCCTTCCAAAGAGGCGACCAGGTCGAAGTCTGCAGCAAACTTGAAGGCTTTCTTGGCTCTTATTACGAGGCCACCGTCGTGGCAAACATGGGCACCAACTACGTTGTCCAGTACAACAACTTGGTCGAGGAGTTCAACGACGCTGTGCCGCTGAAAGAGACCGTCAAGGCCGCCGAGGTCCGCCCTTTGCCGCCGGAAATCAGGGAGGCTAATAATAATGGTGCTGGGTTTCATGTGGGTGATAGGATCGATGCTTACGATCTTGATGGGTGGTGGGTCGGTACAGTTTCGTCGGAGGATAATGGGTCTGGGTATCAGTCTGTGTTTTTTGAGTATACTGGGCAAGAGCTGGAGTACCCAGTTTTGAAGCTGAGGGTTCATCAGGATTGGCGCAATGGGAAATGGGTCTTGTCCAAGAAGACCAAGAGGACTGTTGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

5.07

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 9 - 69 2.9e-16 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 347
AciI CCGC 4 cut(s) 161, 183, 193, 203
AclWI GGATC 1 cut(s) 266
AfaI GTAC 3 cut(s) 125, 295, 368
AgsI TTSAA 3 cut(s) 56, 148, 379
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 361, 382
AluI AGCT 2 cut(s) 361, 382
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 81, 180
ApeKI GCWGC 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 437
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 4 cut(s) 46, 161, 183, 203
BlsI GCNGC 4 cut(s) 47, 162, 184, 204
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 2 cut(s) 360, 365
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 2 cut(s) 360, 365
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 121, 355, 371
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 121, 355, 371
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 2 cut(s) 83, 182
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 83, 182
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 258, 271
BspACI CCGC 4 cut(s) 161, 183, 193, 203
BspANI GGCC 2 cut(s) 83, 182
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 3 cut(s) 121, 355, 371
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 258, 271
BssNAI GTATAC 1 cut(s) 348
Bst1107I GTATAC 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 88, 175, 298, 445
BstDEI CTNAG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 2 cut(s) 261, 274
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 258, 271
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 437
BstXI CCANNNNNNTGG 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 2 cut(s) 83, 182
BsuTUI ATCGAT 1 cut(s) 261
BtsCI GGATG 1 cut(s) 11
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 3 cut(s) 124, 294, 367
CviAII CATG 2 cut(s) 100, 245
CviJI RGCY 7 cut(s) 60, 69, 83, 182, 221, 361, 382
CviKI_1 RGCY 7 cut(s) 60, 69, 83, 182, 221, 361, 382
CviQI GTAC 3 cut(s) 124, 294, 367
DdeI CTNAG 1 cut(s) 383
DpnI GATC 2 cut(s) 260, 273
DpnII GATC 2 cut(s) 258, 271
EciI GGCGGA 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 103, 248
FaiI YATR 3 cut(s) 101, 246, 348
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 2 cut(s) 99, 244
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 4 cut(s) 46, 161, 183, 203
Fsp4HI GCNGC 4 cut(s) 46, 161, 183, 203
GlaI GCGC 1 cut(s) 404
GluI GCNGC 4 cut(s) 46, 161, 183, 203
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 2 cut(s) 83, 182
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 405
Hin1II CATG 2 cut(s) 103, 248
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 275, 395
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 3 cut(s) 92, 155, 307
HpyAV CCTTC 2 cut(s) 25, 50
HpyCH4III ACNGT 4 cut(s) 88, 175, 298, 445
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 103, 248
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 258, 271
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 253
MabI ACCWGGT 1 cut(s) 30
MaeII ACGT 1 cut(s) 114
MalI GATC 2 cut(s) 260, 273
MboI GATC 2 cut(s) 258, 271
MboII GAAGA 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 8 cut(s) 17, 73, 133, 181, 211, 301, 378, 432
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 2 cut(s) 89, 249
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 2 cut(s) 258, 271
NlaIII CATG 2 cut(s) 103, 248
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 267
PdmI GAANNNNTTC 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 4 cut(s) 47, 162, 184, 204
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 3 cut(s) 125, 295, 368
RsaNI GTAC 3 cut(s) 124, 294, 367
RseI CAYNNNNRTG 2 cut(s) 89, 249
SatI GCNGC 4 cut(s) 46, 161, 183, 203
Sau3AI GATC 2 cut(s) 258, 271
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 36, 117, 192, 363, 384
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 89, 249
SsiI CCGC 4 cut(s) 161, 183, 193, 203
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 4 cut(s) 88, 175, 298, 445
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 36, 138, 261
TatI WGTACW 1 cut(s) 123
TauI GCSGC 3 cut(s) 163, 185, 205
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 233, 380
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.