Rh6CG337000

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000631
Physical Location & Seq
Reverse (-)
52456229 .. 52456726
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG337000.1

Sequence Viewer

Length: 498 bp
ATGCACATTTCAAATCGGAGATGCAGTCGAAGTGTGCTGCAACTCGGAAGGGTTTCTTGGCTCATATTGGGAAGCAACTATAGTCGCAAATATGGGTACCAAGTTACCAACTACTTGGTTGAGTACAAGCATTTTGTGGAGGAGCACGATGAATCTACACCTCTGAGAGAGACTCTCAAGGTGAAAGAATTGCGGCCTCTACCACCTAATATCGTGCCTTCTAGGTATTCTAGTCTTAAAGGGCAGAGGGTCGATGCTTTTCTCAACGACGTTTGGTGGGTTGGAACTATTTCCAGGAAGATAGACTCTGATTATTACGTTGTTTTCTTTGAAAACACTGGGGAAGAGATTGCTTGCCCACTTTCAAAGTTGAGGTTTCATATGAACTGCGTCAATGAGCAGTGGATTCCCTCCAAGAAAAAGAGTGCCCCAGTTTCTTCGAACAGGTTCGCACCGTATTCTTTGAAGGGGAGGCGTGAACAACTCGTGGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

165

Amino Acids

19.29

Weight (kDa)

9.59

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 37 - 69 3.1e-06 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 1 cut(s) 193
AfaI GTAC 2 cut(s) 98, 125
AgsI TTSAA 4 cut(s) 12, 332, 366, 466
AjnI CCWGG 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 37
Asp700I GAANNNNTTC 3 cut(s) 52, 289, 446
Asp718I GGTACC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 96
BauI CACGAG 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 222, 231
BfmI CTRYAG 1 cut(s) 79
BisI GCNGC 2 cut(s) 38, 194
BlsI GCNGC 2 cut(s) 39, 195
Bme1390I CCNGG 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 295
BmrI ACTGGG 2 cut(s) 348, 425
BmsI GCATC 2 cut(s) 11, 244
BmuI ACTGGG 2 cut(s) 348, 425
BplI GAGNNNNNCTC 4 cut(s) 157, 189, 159, 191
Bpu14I TTCGAA 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 2 cut(s) 343, 431
BseBI CCWGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 343, 431
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 147, 430
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 96
BsrI ACTGG 2 cut(s) 343, 431
BssSI CACGAG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 2 cut(s) 336, 407
Cac8I GCNNGC 1 cut(s) 355
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 97, 124
CviJI RGCY 2 cut(s) 61, 196
CviKI_1 RGCY 2 cut(s) 61, 196
CviQI GTAC 2 cut(s) 97, 124
DdeI CTNAG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 293
FaiI YATR 5 cut(s) 65, 81, 93, 381, 383
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 38, 194
Fsp4HI GCNGC 2 cut(s) 38, 194
FspBI CTAG 2 cut(s) 222, 231
GluI GCNGC 2 cut(s) 38, 194
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 379
HinfI GANTC 4 cut(s) 152, 172, 305, 406
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 4 cut(s) 18, 47, 165, 310
Hpy8I GTNNAC 1 cut(s) 479
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 42, 228, 460
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 2 cut(s) 270, 318
HpyCH4V TGCA 3 cut(s) 4, 24, 40
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 270, 318
KpnI GGTACC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 280, 307, 324, 430, 444
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 11, 244
MaeI CTAG 2 cut(s) 222, 231
MaeII ACGT 2 cut(s) 270, 318
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 3 cut(s) 310, 356, 429
MhlI GDGCHC 2 cut(s) 147, 430
MluCI AATT 1 cut(s) 188
MlyI GAGTC 2 cut(s) 166, 299
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 7 cut(s) 133, 171, 207, 240, 366, 421, 465
MroXI GAANNNNTTC 3 cut(s) 52, 289, 446
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
NdeI CATATG 1 cut(s) 381
NlaIV GGNNCC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 440
PdmI GAANNNNTTC 3 cut(s) 52, 289, 446
PfeI GAWTC 2 cut(s) 152, 406
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 2 cut(s) 39, 195
PleI GAGTC 2 cut(s) 166, 299
PpsI GAGTC 2 cut(s) 166, 299
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 98
RsaI GTAC 2 cut(s) 98, 125
RsaNI GTAC 2 cut(s) 97, 124
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 38, 194
SchI GAGTC 2 cut(s) 166, 299
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 2 cut(s) 147, 430
SetI ASST 8 cut(s) 163, 183, 208, 227, 273, 321, 377, 449
SfaNI GCATC 2 cut(s) 11, 244
SfcI CTRYAG 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 188
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 222, 231
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 2 cut(s) 273, 321
TaqI TCGA 3 cut(s) 28, 252, 440
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 152, 406
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 343, 407
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 165, 368, 398
TspRI CASTG 2 cut(s) 343, 407
XmnI GAANNNNTTC 3 cut(s) 52, 289, 446
XspI CTAG 2 cut(s) 222, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.