RchiOBHm_Chr3g0454011

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000631
Physical Location & Seq
Forward (+)
4241649 .. 4242755
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42104

Sequence Viewer

Length: 465 bp
ATGGTGTTACACTCAGAGATTTCGTTCCGACGAGGCGATAAGGTAGAAGTATGTAGCAAAGTTCCGGGATATATTGGCTCTTACTTTGAGGCAACCGTAGTAGCAAACATGGGCAGCAACTATGTGGTTCAGTACAAGAGCCTAGTGGAGGAATACGACGAGTCTGTACCTTTGAAAGAGACCGTAATGGCGGACGAGGTCCGCCCTATGCCGCCGGAAGTTACTGAGGCTCCTGAGTTTCATATTGGTAACAGGGTTGATGCGTACGACCTCGACGGGTGGTGGGTTGGTACCATTTCTTCTGAGAACAATGTGTATGGTTTTCACGCTGTGTTTTTCGAAACAACCGGGGAGAAGATTTCTTACCCACTCTGGAATCTGAGAGTTCATCAAGACTGGCGCGGTGGAAAGTGGGTCGTGTCTTCCAACAACAAGAAGAAGAAGAGACTTGCTTTGCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

5.58

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 5.4e-17 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 1 cut(s) 402
AciI CCGC 4 cut(s) 191, 202, 212, 402
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 4 cut(s) 134, 168, 266, 292
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 175
Alw26I GTCTC 2 cut(s) 173, 439
ApeKI GCWGC 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 66, 349
AsuII TTCGAA 1 cut(s) 339
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 290
BarI GAAGNNNNNNTAC 4 cut(s) 283, 315, 347, 379
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 126
BcnI CCSGG 2 cut(s) 66, 349
BcoDI GTCTC 2 cut(s) 173, 439
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 115, 212
BlsI GCNGC 2 cut(s) 116, 213
Bme1390I CCNGG 2 cut(s) 66, 349
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 231, 292
BmrFI CCNGG 2 cut(s) 66, 349
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 339
BpuMI CCSGG 2 cut(s) 66, 349
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 5 cut(s) 27, 216, 225, 294, 371
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 3 cut(s) 65, 215, 348
BsiWI CGTACG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 173, 439
Bso31I GGTCTC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 339
BspACI CCGC 4 cut(s) 191, 202, 212, 402
BspCNI CTCAG 5 cut(s) 26, 217, 226, 295, 372
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 231, 292
BspT104I TTCGAA 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 97, 184
Bst6I CTCTTC 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 13, 225, 234, 303, 380
BstENI CCTNNNNNAGG 1 cut(s) 146
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 402
BstMAI GTCTC 2 cut(s) 173, 439
BstSCI CCNGG 2 cut(s) 64, 347
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 414
CfoI GCGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 4 cut(s) 133, 167, 265, 291
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 78, 141, 230
CviKI_1 RGCY 3 cut(s) 78, 141, 230
CviQI GTAC 4 cut(s) 133, 167, 265, 291
DdeI CTNAG 5 cut(s) 13, 225, 234, 303, 380
DraIII CACNNNGTG 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 2 cut(s) 191, 206
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 146
FaeI CATG 1 cut(s) 112
FaiI YATR 7 cut(s) 52, 72, 110, 123, 209, 243, 318
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 115, 212
Fsp4HI GCNGC 2 cut(s) 115, 212
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 401
GluI GCNGC 2 cut(s) 115, 212
HapII CCGG 3 cut(s) 65, 215, 348
HhaI GCGC 1 cut(s) 402
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HinfI GANTC 2 cut(s) 161, 376
HpaII CCGG 3 cut(s) 65, 215, 348
Hpy188I TCNGA 4 cut(s) 16, 29, 304, 381
Hpy188III TCNNGA 3 cut(s) 233, 373, 392
Hpy99I CGWCG 3 cut(s) 33, 161, 278
HpyCH4III ACNGT 2 cut(s) 97, 184
HpyF3I CTNAG 5 cut(s) 13, 225, 234, 303, 380
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 400
KpnI GGTACC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 78, 228, 238, 246, 358, 361, 382
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 6, 220, 248
MboII GAAGA 6 cut(s) 291, 367, 414, 448, 451, 454
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 52, 450
MnlI CCTC 6 cut(s) 26, 82, 142, 190, 220, 281
MspI CCGG 3 cut(s) 65, 215, 348
MspR9I CCNGG 2 cut(s) 66, 349
MvnI CGCG 1 cut(s) 402
NciI CCSGG 2 cut(s) 66, 349
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 231, 292
NspV TTCGAA 1 cut(s) 339
PfeI GAWTC 1 cut(s) 376
Pfl23II CGTACG 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 116, 213
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspLI CGTACG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 231, 292
PspPI GGNCC 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 4 cut(s) 134, 168, 266, 292
RsaNI GTAC 4 cut(s) 133, 167, 265, 291
SatI GCNGC 2 cut(s) 115, 212
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 66, 349
SetI ASST 4 cut(s) 45, 172, 201, 273
SfaNI GCATC 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 1 cut(s) 199
SsiI CCGC 4 cut(s) 191, 202, 212, 402
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 64, 347
TaaI ACNGT 2 cut(s) 97, 184
TaqI TCGA 2 cut(s) 273, 339
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 376
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 230, 377
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 146
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.