Rmu_sc0001089.1_g000020

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001089.1
OG0000631
Physical Location & Seq
Reverse (-)
81366 .. 83767
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001089.1_g000020.1.cds

Sequence Viewer

Length: 975 bp
atgaaatgggtctcaaggagcgacgtcgaccactcgtgtcacaccaggcgggacccacgtgtccccctaggggctcctttcctttcgttcctttggggggtggggccctgtggtttttggtggtgttgggcggggacgtgttgttgttggcaaccacctgcccgcagcgagggtcatgtcaatcgggtcaagtacgtccatggatatccgaagccgattcggtgctccatttcttgcaagtcaacttgcaatactgctcaagagtcgctttgctactcccagttcagactcgaaagcaccaatccaattatccaaactacatcactgaatgtgaatcctttacctctattctctgcgcctgcatttgcatcaattaggcccgtcagcgagctctacggcttagccggaggccatactggagtggcttcagaaggaaatggggaggaattcaacgactctgtgccgctcaaagagaccatcaaggctgcggagatcctgccgctgccgccggaaatcagggaggctaatgctgggtttcatgtgggtgataggatcgatgcttacgatcttgatgggtggtgggtcggtacaatttcgtcagaggaaaatgggtctgggcatcagtctctgttcgtcgagactactgggcaagagcttgattacctagttttgaagctgagggttcatcaagattggagcaatggaaaatggtgtcgtccaagaagacaaagagaaatgttgtgcgatgaaactgcgtcgttatgggcttctgattgttctgatcttgttggctattgtttcagaccaagaaacaaattagcctatatggttcttgtattgcaaagaacagagagaaaatcaaaaaatgatgggaatgttgtagcgaatatcggggtatcatcctcatcatcacattatcaagcagaaatcaaaaactccagtccaatacacttctatattgaggaacgaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

324

Amino Acids

36.33

Weight (kDa)

6.78

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 27
AciI CCGC 7 cut(s) 49, 131, 163, 464, 488, 500, 506
AclWI GGATC 2 cut(s) 487, 560
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 411
AcvI CACGTG 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 194, 589
AfiI CCNNNNNNNGG 3 cut(s) 70, 97, 169
AflIII ACRYGT 2 cut(s) 58, 137
AgsI TTSAA 2 cut(s) 451, 673
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 3 cut(s) 391, 655, 676
AluI AGCT 3 cut(s) 391, 655, 676
Alw21I GWGCWC 2 cut(s) 227, 393
Alw26I GTCTC 4 cut(s) 16, 467, 630, 632
AlwI GGATC 2 cut(s) 487, 560
AlwNI CAGNNNCTG 1 cut(s) 628
AoxI GGCC 3 cut(s) 104, 377, 409
ApaI GGGCCC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 165, 485, 502
ApoI RAATTY 1 cut(s) 446
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 4 cut(s) 52, 104, 105, 378
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 108
BanII GRGCYC 3 cut(s) 76, 108, 393
BauI CACGAG 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 730
Bbv12I GWGCWC 2 cut(s) 227, 393
BbvCI CCTCAGC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 177, 472, 489
BccI CCATC 3 cut(s) 485, 566, 863
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 4 cut(s) 16, 467, 630, 632
BfaI CTAG 2 cut(s) 68, 665
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 6 cut(s) 166, 464, 486, 500, 503, 506
BlnI CCTAGG 1 cut(s) 67
BlpI GCTNAGC 1 cut(s) 400
BlsI GCNGC 6 cut(s) 167, 465, 487, 501, 504, 507
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 4 cut(s) 52, 104, 105, 378
BmiI GGNNCC 5 cut(s) 53, 54, 75, 105, 106
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 2 cut(s) 274, 654
BmsI GCATC 3 cut(s) 377, 547, 628
BmuI ACTGGG 2 cut(s) 274, 654
BpiI GAAGAC 1 cut(s) 730
BpmI CTGGAG 2 cut(s) 438, 922
Bpu10I CCTNAGC 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 16, 467
BsaJI CCNNGG 2 cut(s) 67, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 97, 169
Bse1I ACTGG 4 cut(s) 280, 421, 649, 939
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 1 cut(s) 46
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 67, 199
BseGI GGATG 1 cut(s) 899
BseLI CCNNNNNNNGG 3 cut(s) 70, 97, 169
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 4 cut(s) 280, 421, 649, 939
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 3 cut(s) 177, 472, 489
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 106, 379, 411
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 2 cut(s) 227, 393
BsiSI CCGG 2 cut(s) 405, 509
BslFI GGGAC 3 cut(s) 47, 65, 148
BslI CCNNNNNNNGG 3 cut(s) 70, 97, 169
BsmAI GTCTC 4 cut(s) 16, 467, 630, 632
BsmFI GGGAC 3 cut(s) 47, 65, 148
BsnI GGCC 3 cut(s) 106, 379, 411
Bso31I GGTCTC 2 cut(s) 16, 467
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 4 cut(s) 76, 108, 227, 393
Bsp143I GATC 4 cut(s) 492, 552, 565, 781
Bsp1720I GCTNAGC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 7 cut(s) 49, 131, 163, 464, 488, 500, 506
BspANI GGCC 3 cut(s) 106, 379, 411
BspCNI CTCAG 1 cut(s) 669
BspDI ATCGAT 1 cut(s) 555
BspLI GGNNCC 5 cut(s) 53, 54, 75, 105, 106
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 487, 560
BspTNI GGTCTC 2 cut(s) 16, 467
BsrBI CCGCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 4 cut(s) 280, 421, 649, 939
BssECI CCNNGG 2 cut(s) 67, 199
BssMI GATC 4 cut(s) 492, 552, 565, 781
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 34
BssT1I CCWWGG 2 cut(s) 67, 199
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 163, 360, 389
BstDEI CTNAG 2 cut(s) 400, 677
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 899
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 4 cut(s) 495, 555, 568, 784
BstMAI GTCTC 4 cut(s) 16, 467, 630, 632
BstMBI GATC 4 cut(s) 492, 552, 565, 781
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 177, 472, 489
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 3 cut(s) 106, 379, 411
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 759
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 899
BtsIMutI CAGTG 1 cut(s) 323
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 163, 360, 389
CaiI CAGNNNCTG 1 cut(s) 628
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 4 cut(s) 52, 104, 105, 378
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 1 cut(s) 744
Csp6I GTAC 2 cut(s) 193, 588
CviAII CATG 3 cut(s) 176, 200, 539
CviQI GTAC 2 cut(s) 193, 588
DdeI CTNAG 2 cut(s) 400, 677
DpnI GATC 4 cut(s) 494, 554, 567, 783
DpnII GATC 4 cut(s) 492, 552, 565, 781
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 67, 199
Eco24I GRGCYC 3 cut(s) 76, 108, 393
Eco31I GGTCTC 2 cut(s) 16, 467
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 411
Eco72I CACGTG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 3 cut(s) 52, 104, 105
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 44
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 67, 199
EcoT38I GRGCYC 3 cut(s) 76, 108, 393
ErhI CCWWGG 2 cut(s) 67, 199
FaeI CATG 3 cut(s) 179, 203, 542
FaiI YATR 8 cut(s) 177, 201, 414, 540, 763, 825, 827, 957
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 3 cut(s) 47, 65, 148
FatI CATG 3 cut(s) 175, 199, 538
FauI CCCGC 3 cut(s) 42, 124, 170
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 6 cut(s) 166, 464, 486, 500, 503, 506
FokI GGATG 1 cut(s) 886
FriOI GRGCYC 3 cut(s) 76, 108, 393
Fsp4HI GCNGC 6 cut(s) 166, 464, 486, 500, 503, 506
FspBI CTAG 2 cut(s) 68, 665
GlaI GCGC 1 cut(s) 357
GluI GCNGC 6 cut(s) 166, 464, 486, 500, 503, 506
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 2 cut(s) 438, 922
HaeIII GGCC 3 cut(s) 106, 379, 411
HapII CCGG 2 cut(s) 405, 509
HgaI GACGC 1 cut(s) 744
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 179, 203, 542
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 2 cut(s) 28, 243
HindII GTYRAC 2 cut(s) 28, 243
HinfI GANTC 5 cut(s) 217, 263, 288, 334, 455
HpaII CCGG 2 cut(s) 405, 509
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 28, 243
Hpy188I TCNGA 7 cut(s) 210, 287, 430, 601, 772, 781, 803
Hpy188III TCNNGA 4 cut(s) 260, 569, 637, 689
Hpy8I GTNNAC 2 cut(s) 28, 243
Hpy99I CGWCG 4 cut(s) 26, 29, 638, 760
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 4 cut(s) 24, 58, 137, 195
HpyCH4V TGCA 5 cut(s) 237, 249, 362, 368, 841
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 2 cut(s) 400, 677
HpySE526I ACGT 4 cut(s) 24, 58, 137, 195
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 179, 203, 542
HspAI GCGC 1 cut(s) 356
KflI GGGWCCC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 492, 552, 565, 781
LmnI GCTCC 4 cut(s) 18, 79, 230, 696
Lsp1109I GCAGC 3 cut(s) 177, 472, 489
LweI GCATC 3 cut(s) 377, 547, 628
MaeI CTAG 2 cut(s) 68, 665
MaeII ACGT 4 cut(s) 24, 58, 137, 195
MaeIII GTNAC 1 cut(s) 38
MalI GATC 4 cut(s) 494, 554, 567, 783
MbiI CCGCTC 1 cut(s) 466
MboI GATC 4 cut(s) 492, 552, 565, 781
MboII GAAGA 1 cut(s) 735
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 4 cut(s) 76, 108, 227, 393
MluCI AATT 5 cut(s) 306, 372, 446, 591, 815
MlyI GAGTC 3 cut(s) 272, 282, 449
MnlI CCTC 9 cut(s) 163, 354, 401, 436, 514, 595, 672, 913, 955
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 2 cut(s) 405, 509
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 505
NcoI CCATGG 1 cut(s) 199
NdeII GATC 4 cut(s) 492, 552, 565, 781
NlaIII CATG 3 cut(s) 179, 203, 542
NlaIV GGNNCC 5 cut(s) 53, 54, 75, 105, 106
NmuCI GTSAC 1 cut(s) 38
PaqCI CACCTGC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PfeI GAWTC 2 cut(s) 217, 334
PkrI GCNGC 6 cut(s) 167, 465, 487, 501, 504, 507
PleI GAGTC 3 cut(s) 271, 282, 449
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 3 cut(s) 271, 282, 449
Ppu21I YACGTR 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 5 cut(s) 53, 54, 75, 105, 106
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 4 cut(s) 52, 104, 105, 378
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 2 cut(s) 194, 589
RsaNI GTAC 2 cut(s) 193, 588
RseI CAYNNNNRTG 1 cut(s) 543
SacI GAGCTC 1 cut(s) 393
SalI GTCGAC 1 cut(s) 26
SatI GCNGC 6 cut(s) 166, 464, 486, 500, 503, 506
Sau3AI GATC 4 cut(s) 492, 552, 565, 781
Sau96I GGNCC 4 cut(s) 52, 104, 105, 378
SchI GAGTC 3 cut(s) 272, 282, 449
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 4 cut(s) 76, 108, 227, 393
SfaNI GCATC 3 cut(s) 377, 547, 628
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 13, 258
SmoI CTYRAG 2 cut(s) 13, 258
Sse9I AATT 5 cut(s) 306, 372, 446, 591, 815
SsiI CCGC 7 cut(s) 49, 131, 163, 464, 488, 500, 506
SspMI CTAG 2 cut(s) 68, 665
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 67, 199
TaiI ACGT 4 cut(s) 27, 61, 140, 198
TaqI TCGA 4 cut(s) 27, 291, 555, 636
TasI AATT 5 cut(s) 306, 372, 446, 591, 815
TauI GCSGC 3 cut(s) 466, 502, 508
TfiI GAWTC 2 cut(s) 217, 334
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 3 cut(s) 165, 485, 502
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 4 cut(s) 17, 527, 674, 762
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 446
XmaJI CCTAGG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 68, 665
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.