Rmu_sc0002477.1_g000009

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002477.1
OG0000631
Physical Location & Seq
Reverse (-)
40715 .. 41061
347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002477.1_g000009.1.cds

Sequence Viewer

Length: 288 bp
atgggcaccaactatgtgttccagtacaaaaacctcatggaggagttcaacgactctgtgtcgctcaaagagaccattaaggcgccgaggatcgatgcttacgatcttgatgggtggtgggtcagtaagatttcgtctgaggaaaatgggtctgggcatcagtctgtgtttttcgagactactgggcaagagcttgattacccagttttgaagttgatggttcatcaagattggcgcaatggaaaattggtgtcgtccaagaagaccaagaggaatgctgtgcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

95

Amino Acids

11.02

Weight (kDa)

6.73

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 82
AclWI GGATC 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 49, 211
AhdI GACNNNNNGTC 1 cut(s) 58
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 65, 170
AlwI GGATC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 85, 237
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 2 cut(s) 5, 82
BbsI GAAGAC 1 cut(s) 269
BccI CCATC 2 cut(s) 104, 211
BcoDI GTCTC 2 cut(s) 65, 170
BfoI RGCGCY 1 cut(s) 86
BmeRI GACNNNNNGTC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 7, 84
BmrI ACTGGG 2 cut(s) 192, 197
BmsI GCATC 2 cut(s) 85, 166
BmuI ACTGGG 2 cut(s) 192, 197
BpiI GAAGAC 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 22, 187, 203
Bse3DI GCAATG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 22, 187, 203
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 8
BshNI GGYRCC 2 cut(s) 5, 82
BshVI ATCGAT 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 65, 170
BsmI GAATGC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 90, 103
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 7, 84
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 2 cut(s) 5, 82
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 3 cut(s) 22, 187, 203
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 90, 103
BssNI GRCGYC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 237
BstKTI GATC 2 cut(s) 93, 106
BstMAI GTCTC 2 cut(s) 65, 170
BstMBI GATC 2 cut(s) 90, 103
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 93
CfoI GCGC 2 cut(s) 85, 237
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 37
CviJI RGCY 1 cut(s) 193
CviKI_1 RGCY 1 cut(s) 193
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 138
DinI GGCGCC 1 cut(s) 84
DpnI GATC 2 cut(s) 92, 105
DpnII GATC 2 cut(s) 90, 103
DriI GACNNNNNGTC 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 15, 38
FatI CATG 1 cut(s) 36
GlaI GCGC 2 cut(s) 84, 236
HaeII RGCGCY 1 cut(s) 86
HhaI GCGC 2 cut(s) 85, 237
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 2 cut(s) 83, 235
HinP1I GCGC 2 cut(s) 83, 235
HinfI GANTC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 107, 175, 227
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 2 cut(s) 83, 235
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 90, 103
LpnPI CCDG 4 cut(s) 35, 138, 168, 216
LweI GCATC 2 cut(s) 85, 166
MalI GATC 2 cut(s) 92, 105
MboI GATC 2 cut(s) 90, 103
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 5 cut(s) 34, 44, 81, 133, 264
MseI TTAA 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 280
NarI GGCGCC 1 cut(s) 83
NdeII GATC 2 cut(s) 90, 103
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 7, 84
NmeAIII GCCGAG 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 7, 84
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 2 cut(s) 90, 103
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 36, 195
SfaNI GCATC 2 cut(s) 85, 166
SfoI GGCGCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 245
SspDI GGCGCC 1 cut(s) 82
TaqI TCGA 2 cut(s) 93, 174
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.