Rroxscaffold_7G00176960

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000631
Physical Location & Seq
Forward (+)
16572870 .. 16573449
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176960.1

Sequence Viewer

Length: 387 bp
ATGGCTTTTCACTCAAATCGTTCTTTCCAAAGAGGAGATCAAGTGGAAGTGTCTTGCAATATGGAAGGGTTTCTTGGCTCATTTTGGCGAGCAACCATAGTAGCAAATATGGGTACCAACTACGTGGTTGAGTACAAAGATCTCGTGGAGGAACATGATGAATCTACACTTCTGAGAGAGACTGTCATGGCGAAACAGGGACGGTTGGTGGGTCGGAAAGATTTCTGGGAGGAAGGGTCTGATAAGTACTATGTTTTCTTTGAAACCACCGGGGAAGAGATTGCTTACCCGATTTCGCAGTTGAGGTTTCATCTAGACTGGCGCAGTGGGAAGTGGATTTCTCACAAGAGTCCTTCCAAAAAGAGGCGCAAGATGGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

128

Amino Acids

15.11

Weight (kDa)

6.1

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 66 7.8e-14 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AfaI GTAC 3 cut(s) 115, 134, 248
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
Alw26I GTCTC 1 cut(s) 173
Asp700I GAANNNNTTC 2 cut(s) 69, 221
Asp718I GGTACC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 324, 369
AsuC2I CCSGG 1 cut(s) 271
BanI GGYRCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 143
BccI CCATC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 314
BglII AGATCT 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 37, 139
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 37, 139
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 184, 204
Bst6I CTCTTC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 2 cut(s) 324, 369
BstKTI GATC 2 cut(s) 40, 142
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 37, 139
BstSCI CCNGG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 139
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 324, 369
Csp6I GTAC 3 cut(s) 114, 133, 247
CviAII CATG 2 cut(s) 155, 187
CviJI RGCY 2 cut(s) 5, 78
CviKI_1 RGCY 2 cut(s) 5, 78
CviQI GTAC 3 cut(s) 114, 133, 247
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 39, 141
DpnII GATC 2 cut(s) 37, 139
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
FaeI CATG 2 cut(s) 158, 190
FaiI YATR 6 cut(s) 62, 98, 110, 156, 188, 252
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 154, 186
FspBI CTAG 1 cut(s) 314
GlaI GCGC 2 cut(s) 323, 368
HapII CCGG 1 cut(s) 270
HhaI GCGC 2 cut(s) 324, 369
Hin1II CATG 2 cut(s) 158, 190
Hin6I GCGC 2 cut(s) 322, 367
HinP1I GCGC 2 cut(s) 322, 367
HinfI GANTC 2 cut(s) 161, 349
HpaII CCGG 1 cut(s) 270
Hpy188I TCNGA 3 cut(s) 174, 216, 241
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 59, 227, 363
HpyCH4III ACNGT 2 cut(s) 184, 204
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 158, 190
HspAI GCGC 2 cut(s) 322, 367
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 37, 139
LpnPI CCDG 4 cut(s) 182, 211, 283, 304
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 39, 141
MboI GATC 2 cut(s) 37, 139
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 139
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 5 cut(s) 26, 142, 223, 297, 357
MroXI GAANNNNTTC 2 cut(s) 69, 221
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
NciI CCSGG 1 cut(s) 271
NdeII GATC 2 cut(s) 37, 139
NlaIII CATG 2 cut(s) 158, 190
NlaIV GGNNCC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 69, 221
PfeI GAWTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 115, 134, 248
RsaNI GTAC 3 cut(s) 114, 133, 247
Sau3AI GATC 2 cut(s) 37, 139
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 271
SetI ASST 2 cut(s) 126, 308
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 184, 204
TaiI ACGT 1 cut(s) 126
TatI WGTACW 2 cut(s) 132, 246
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 174, 299
TspRI CASTG 1 cut(s) 331
XbaI TCTAGA 1 cut(s) 313
XmnI GAANNNNTTC 2 cut(s) 69, 221
XspI CTAG 1 cut(s) 314
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.