Prupe.6G314400_v2.0.a1

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000631
Physical Location & Seq
Reverse (-)
28078158 .. 28078589
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G314400.1

Sequence Viewer

Length: 432 bp
ATGGGTTTCCCTAGAGCAAAGGCTTTTACACAAGGCAAGAGGGTCGAAGTGTGCAGCAGAGAAGACGGGTTTCAGGGCTCCTACTATGGAGCAACCATACTGCAAAACATGGGGGACAACAAGTACAAAGTGAAGTACAACCGCCTCGTATGCGAGGACGACCACTCCATACCTCTGGAAGAGGTGGTCGAGGGGGATGAGATACGGCCTCTGCCTCCTCTGCCTCCGCCCAAGAAAACGAAAGCCGGGTTCGCTGACGGGGACAGGGTTGATGCATTTGACAACGACGGCTGGTGGTCTGGAATCATTACTGGGAAGGTCGGGTGCTACTTTGGCGTCTACTTTGAGACTGGACATCATATTGGTTACCCTGAGAGAATGCTGAGGCATCACATGGATTGGCGCAATGGAGAATGGTTCTTCTACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

6.05

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 339
AciI CCGC 2 cut(s) 142, 227
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 2 cut(s) 125, 137
Alw26I GTCTC 1 cut(s) 341
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 247
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 66
BceAI ACGGC 2 cut(s) 221, 304
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 2 cut(s) 12, 430
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 262, 397
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse1I ACTGG 2 cut(s) 316, 355
Bse3DI GCAATG 1 cut(s) 412
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 363, 374
BseNI ACTGG 2 cut(s) 316, 355
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 73
BshFI GGCC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 128, 275
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 128, 275
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 80
BspACI CCGC 2 cut(s) 142, 227
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 364, 375
BspLI GGNNCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 2 cut(s) 316, 355
BssNI GRCGYC 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 372, 383
BstEII GGTNACC 1 cut(s) 365
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 341
BstMWI GCNNNNNNNGC 4 cut(s) 150, 220, 251, 333
BstPI GGTNACC 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 202
CfoI GCGC 1 cut(s) 405
CseI GACGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 124, 136
CviAII CATG 2 cut(s) 109, 394
CviJI RGCY 5 cut(s) 23, 78, 208, 245, 291
CviKI_1 RGCY 5 cut(s) 23, 78, 208, 245, 291
CviQI GTAC 2 cut(s) 124, 136
DdeI CTNAG 2 cut(s) 372, 383
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 2 cut(s) 112, 397
FaiI YATR 7 cut(s) 87, 98, 110, 151, 170, 360, 395
FaqI GGGAC 2 cut(s) 128, 275
FatI CATG 2 cut(s) 108, 393
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 2 cut(s) 12, 430
GlaI GCGC 1 cut(s) 404
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 112, 397
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 176, 300
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 54, 103, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 220, 251, 333
HpyF3I CTNAG 2 cut(s) 372, 383
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 112, 397
HspAI GCGC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 83, 89
LpnPI CCDG 9 cut(s) 59, 161, 250, 259, 277, 285, 297, 336, 384
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 262, 397
MaeI CTAG 2 cut(s) 12, 430
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 3 cut(s) 74, 191, 412
MhlI GDGCHC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 277
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 247
Mva1269I GAATGC 1 cut(s) 384
MwoI GCNNNNNNNGC 4 cut(s) 150, 220, 251, 333
NciI CCSGG 1 cut(s) 247
NlaIII CATG 2 cut(s) 112, 397
NlaIV GGNNCC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 277
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 56
PspEI GGTNACC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 79
RsaI GTAC 2 cut(s) 125, 137
RsaNI GTAC 2 cut(s) 124, 136
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 80
SetI ASST 3 cut(s) 175, 186, 321
SfaNI GCATC 2 cut(s) 262, 397
SsiI CCGC 2 cut(s) 142, 227
SspMI CTAG 2 cut(s) 12, 430
StyD4I CCNGG 1 cut(s) 245
TaqI TCGA 2 cut(s) 45, 189
TatI WGTACW 2 cut(s) 123, 135
TfiI GAWTC 1 cut(s) 303
TseI GCWGC 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 2 cut(s) 12, 430
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.