Prupe.6G314500_v2.0.a1

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000631
Physical Location & Seq
Reverse (-)
28080074 .. 28081448
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G314500.1

Sequence Viewer

Length: 519 bp
ATGGCTTTCACCACGAGAAAAGTTTTTCAAGTAGGCGATGAGGTAGAAGTGTGCAGCAAGCAAGACGGGTTTCACGGTTCGTATTATGAAGGAATTGTAATTGAAAACTTGGGGGACAAGTATAAGGTGAAGTACAGGAACCTGGTGGAGGAGAATGACATGTCCACCGCTCTGGAAGAGCTCGCGGAGGTGGACGAGGTCCGGCCTGTGTGCCCTAAAGTTTGGCCTGACTTTTTTCCCGGCGAGAAGGTTGATGCGTTCGCCAACGACGGTTGGTGGGCTGGTATCATTACTAGGAAGAGTGGAGACGACTGGTTTGTCTACTTTCCAAGCACTTTTGAGCATATAGCTTACCCTAAGAAGCATATCAGGCTTCATCTGGAGAGCCGCCGCAACGGATGGGTTTCTCGCGATGGACGGGTCTTCTCTTGCGAGGGAAAGCCGCTGTCTTGCAAGAAGAGACTGCGCATTGTGATGGGAGGATCATCATCGACATCTGTTAAAGCTCGACTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

173

Amino Acids

19.7

Weight (kDa)

7.67

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc16I TGCGCA 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 185, 411
AciI CCGC 5 cut(s) 168, 185, 388, 391, 443
AclWI GGATC 1 cut(s) 490
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 2 cut(s) 29, 104
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 3 cut(s) 181, 350, 506
AluI AGCT 3 cut(s) 181, 350, 506
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 300, 454
AlwI GGATC 1 cut(s) 490
AoxI GGCC 2 cut(s) 203, 224
ApeKI GCWGC 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 66
BccI CCATC 3 cut(s) 393, 407, 469
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 300, 454
BfaI CTAG 1 cut(s) 294
BisI GCNGC 4 cut(s) 55, 388, 391, 443
BlsI GCNGC 4 cut(s) 56, 389, 392, 444
Bme1390I CCNGG 2 cut(s) 143, 240
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 143, 240
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 487
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 404
BseJI GATNNNNATC 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 185, 411
BshFI GGCC 2 cut(s) 205, 226
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 202, 240
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 300, 454
BsmBI CGTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 2 cut(s) 205, 226
Bsp1286I GDGCHC 2 cut(s) 183, 215
Bsp143I GATC 1 cut(s) 482
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 5 cut(s) 168, 185, 388, 391, 443
BspANI GGCC 2 cut(s) 205, 226
BspFNI CGCG 2 cut(s) 185, 411
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 171
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 317
BssMI GATC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 77, 272
Bst6I CTCTTC 3 cut(s) 171, 293, 452
BstC8I GCNNGC 2 cut(s) 59, 183
BstDEI CTNAG 1 cut(s) 357
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 2 cut(s) 185, 411
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 485
BstMAI GTCTC 2 cut(s) 300, 454
BstMBI GATC 1 cut(s) 482
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 141, 238
BstSLI GKGCMC 1 cut(s) 215
BstUI CGCG 2 cut(s) 185, 411
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 205, 226
BtgZI GCGATG 2 cut(s) 51, 426
BtsCI GGATG 1 cut(s) 404
BtuMI TCGCGA 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 59, 183
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 199
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 160
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 484
DpnII GATC 1 cut(s) 482
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 171, 293, 452
EarI CTCTTC 3 cut(s) 171, 293, 452
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 1 cut(s) 163
FaiI YATR 6 cut(s) 87, 123, 161, 345, 347, 366
FalI AAGNNNNNCTT 1 cut(s) 495
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 159
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 55, 388, 391, 443
FokI GGATG 1 cut(s) 411
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 55, 388, 391, 443
FspBI CTAG 1 cut(s) 294
FspI TGCGCA 1 cut(s) 467
GlaI GCGC 1 cut(s) 467
GluI GCNGC 4 cut(s) 55, 388, 391, 443
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 2 cut(s) 205, 226
HapII CCGG 2 cut(s) 202, 240
HhaI GCGC 1 cut(s) 468
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HpaII CCGG 2 cut(s) 202, 240
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 3 cut(s) 165, 193, 322
Hpy188III TCNNGA 3 cut(s) 173, 380, 410
Hpy8I GTNNAC 3 cut(s) 165, 193, 322
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 83, 241
HpyCH4III ACNGT 2 cut(s) 77, 272
HpyCH4V TGCA 2 cut(s) 54, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 482
LguI GCTCTTC 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 244
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 1 cut(s) 294
MalI GATC 1 cut(s) 484
MbiI CCGCTC 1 cut(s) 170
MboI GATC 1 cut(s) 482
MboII GAAGA 4 cut(s) 188, 310, 415, 469
MhlI GDGCHC 2 cut(s) 183, 215
MluCI AATT 2 cut(s) 93, 99
MnlI CCTC 6 cut(s) 34, 142, 181, 190, 427, 473
MseI TTAA 2 cut(s) 501, 517
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 2 cut(s) 202, 240
MspR9I CCNGG 2 cut(s) 143, 240
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 185, 411
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 482
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 140
NruI TCGCGA 1 cut(s) 411
NsbI TGCGCA 1 cut(s) 467
NspI RCATGY 1 cut(s) 163
PciI ACATGT 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 4 cut(s) 56, 389, 392, 444
PscI ACATGT 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 197
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 501, 517
SatI GCNGC 4 cut(s) 55, 388, 391, 443
Sau3AI GATC 1 cut(s) 482
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 143, 240
SduI GDGCHC 2 cut(s) 183, 215
SetI ASST 9 cut(s) 45, 129, 144, 183, 192, 201, 252, 352, 508
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 2 cut(s) 93, 99
SsiI CCGC 5 cut(s) 168, 185, 388, 391, 443
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 141, 238
TaaI ACNGT 2 cut(s) 77, 272
TaqI TCGA 2 cut(s) 491, 508
TasI AATT 2 cut(s) 93, 99
TatI WGTACW 1 cut(s) 132
TauI GCSGC 3 cut(s) 390, 393, 445
Tru1I TTAA 2 cut(s) 501, 517
Tru9I TTAA 2 cut(s) 501, 517
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 102, 365
TspGWI ACGGA 1 cut(s) 411
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 146
XceI RCATGY 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.